miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 5' -57.9 NC_003521.1 + 59355 0.71 0.652285
Target:  5'- --cACGCUGCAggcggcgcgccagccGCUGGACgCCGCgCAg -3'
miRNA:   3'- cauUGCGACGU---------------CGACCUGaGGCGgGU- -5'
14340 5' -57.9 NC_003521.1 + 59488 0.66 0.904728
Target:  5'- --cACGCUGCAGCUacagaaccaGACggCGCCCu -3'
miRNA:   3'- cauUGCGACGUCGAc--------CUGagGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 59550 0.71 0.648312
Target:  5'- ----gGCUGCAGCUGGACgCCGUg-- -3'
miRNA:   3'- cauugCGACGUCGACCUGaGGCGggu -5'
14340 5' -57.9 NC_003521.1 + 65517 0.74 0.455913
Target:  5'- -gAGCGCUGuCAGCUGGGCgacgCCGagaCCGu -3'
miRNA:   3'- caUUGCGAC-GUCGACCUGa---GGCg--GGU- -5'
14340 5' -57.9 NC_003521.1 + 66958 0.7 0.697665
Target:  5'- cUGGCGCUGCGGCaGGACgagCgcaGCCUg -3'
miRNA:   3'- cAUUGCGACGUCGaCCUGa--Gg--CGGGu -5'
14340 5' -57.9 NC_003521.1 + 70652 0.67 0.840929
Target:  5'- --cACGCUGCGGCUGGugcugcaGCUgCUGCUgGa -3'
miRNA:   3'- cauUGCGACGUCGACC-------UGA-GGCGGgU- -5'
14340 5' -57.9 NC_003521.1 + 72196 0.66 0.892181
Target:  5'- cGUGGCGCaGCAGCaacagcagaUGG-CgcaCGCCCAg -3'
miRNA:   3'- -CAUUGCGaCGUCG---------ACCuGag-GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 76498 0.68 0.800187
Target:  5'- -gGACGCgugGCGGCUGuGACUgCUGCUg- -3'
miRNA:   3'- caUUGCGa--CGUCGAC-CUGA-GGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 80310 0.66 0.885584
Target:  5'- gGUGACGgUGguGCUGGAgCUgCGCg-- -3'
miRNA:   3'- -CAUUGCgACguCGACCU-GAgGCGggu -5'
14340 5' -57.9 NC_003521.1 + 80862 0.68 0.82312
Target:  5'- uUGAgGCUggGUAGCUGGcACUCCucggugcggugguuGCCCAa -3'
miRNA:   3'- cAUUgCGA--CGUCGACC-UGAGG--------------CGGGU- -5'
14340 5' -57.9 NC_003521.1 + 88274 0.68 0.825596
Target:  5'- cGUGACGCUgccguaccugaGCAGCgugcugGGGCUgagCGCCCu -3'
miRNA:   3'- -CAUUGCGA-----------CGUCGa-----CCUGAg--GCGGGu -5'
14340 5' -57.9 NC_003521.1 + 90823 0.7 0.707412
Target:  5'- gGUGGCGUcgucgUGCGGCgGGuGCgcgCCGCCCGu -3'
miRNA:   3'- -CAUUGCG-----ACGUCGaCC-UGa--GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 92627 0.69 0.726717
Target:  5'- -cGACGCUGUuuCUGGACUCgGUgCAg -3'
miRNA:   3'- caUUGCGACGucGACCUGAGgCGgGU- -5'
14340 5' -57.9 NC_003521.1 + 97992 0.66 0.904728
Target:  5'- -gGACGCUGguGUUGGuGCcgaugCCgaaGCCCAg -3'
miRNA:   3'- caUUGCGACguCGACC-UGa----GG---CGGGU- -5'
14340 5' -57.9 NC_003521.1 + 98522 0.66 0.892181
Target:  5'- -cGACGCgcGCGGCUGGGCcgCUGCa-- -3'
miRNA:   3'- caUUGCGa-CGUCGACCUGa-GGCGggu -5'
14340 5' -57.9 NC_003521.1 + 98852 0.7 0.707412
Target:  5'- ---cCGCUGCAGCUccuGACgcucgUCGCCCAg -3'
miRNA:   3'- cauuGCGACGUCGAc--CUGa----GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 103006 0.7 0.668144
Target:  5'- -gAGCGCcuuaauaaUGCAGCUGcGCucgUCCGCCCGg -3'
miRNA:   3'- caUUGCG--------ACGUCGACcUG---AGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 105616 0.7 0.687865
Target:  5'- -aGGCGCUGCAGCaGGGCg-UGCUCGg -3'
miRNA:   3'- caUUGCGACGUCGaCCUGagGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 110098 0.69 0.755078
Target:  5'- --cGCGCUGCGGUcaagcGGGCUCugacagCGCCCGu -3'
miRNA:   3'- cauUGCGACGUCGa----CCUGAG------GCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 110678 0.66 0.898564
Target:  5'- cGUAGCGCUcgguggcgGCAGCgGcGGCgCCGCCg- -3'
miRNA:   3'- -CAUUGCGA--------CGUCGaC-CUGaGGCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.