miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14349 3' -54.5 NC_003521.1 + 4219 0.66 0.976694
Target:  5'- gGCgGG-AAgggUGUCGGAGCcCCGAGgCUg -3'
miRNA:   3'- -CGaCCaUUa--GCAGCCUCG-GGCUCaGA- -5'
14349 3' -54.5 NC_003521.1 + 34632 0.68 0.947417
Target:  5'- aGCUGGUGAUCGugcUCGcGGCCCuGGcCg -3'
miRNA:   3'- -CGACCAUUAGC---AGCcUCGGGcUCaGa -5'
14349 3' -54.5 NC_003521.1 + 39234 1.09 0.006594
Target:  5'- aGCUGGUAAUCGUCGGAGCCCGAGUCUu -3'
miRNA:   3'- -CGACCAUUAGCAGCCUCGGGCUCAGA- -5'
14349 3' -54.5 NC_003521.1 + 45298 0.73 0.766774
Target:  5'- cGCUGGgccaggaGcCGGAGCCCGAG-CUg -3'
miRNA:   3'- -CGACCauuag--CaGCCUCGGGCUCaGA- -5'
14349 3' -54.5 NC_003521.1 + 49979 0.68 0.947417
Target:  5'- gGCgGGUgGGUCGagGGAGC-CGGGUCg -3'
miRNA:   3'- -CGaCCA-UUAGCagCCUCGgGCUCAGa -5'
14349 3' -54.5 NC_003521.1 + 53597 0.66 0.981097
Target:  5'- uGCUGGUGGcCGaaGGGGagCGAGUCa -3'
miRNA:   3'- -CGACCAUUaGCagCCUCggGCUCAGa -5'
14349 3' -54.5 NC_003521.1 + 76164 0.66 0.981097
Target:  5'- cGCaGGUAcagGUCGUCGcGGGCCUGcGUg- -3'
miRNA:   3'- -CGaCCAU---UAGCAGC-CUCGGGCuCAga -5'
14349 3' -54.5 NC_003521.1 + 77716 0.67 0.97423
Target:  5'- gGCggcGGUGGUCGUggcgcUGGcGCCCGAGg-- -3'
miRNA:   3'- -CGa--CCAUUAGCA-----GCCuCGGGCUCaga -5'
14349 3' -54.5 NC_003521.1 + 87116 0.67 0.968742
Target:  5'- cGCUGGUGGacgcgCGUCccaaGGAGCgCGAGg-- -3'
miRNA:   3'- -CGACCAUUa----GCAG----CCUCGgGCUCaga -5'
14349 3' -54.5 NC_003521.1 + 95072 0.66 0.976694
Target:  5'- cGCUcaGGUAGUCGcgcaGGGGCUCGGG-Cg -3'
miRNA:   3'- -CGA--CCAUUAGCag--CCUCGGGCUCaGa -5'
14349 3' -54.5 NC_003521.1 + 98481 0.68 0.947417
Target:  5'- -gUGGUGGUCGUCGuGGGCaaCGAGggCUg -3'
miRNA:   3'- cgACCAUUAGCAGC-CUCGg-GCUCa-GA- -5'
14349 3' -54.5 NC_003521.1 + 98532 0.66 0.97573
Target:  5'- gGCUGGgccgcugcagCGgcggCGGgucccagcccgAGCCCGAGUCg -3'
miRNA:   3'- -CGACCauua------GCa---GCC-----------UCGGGCUCAGa -5'
14349 3' -54.5 NC_003521.1 + 99377 0.72 0.827936
Target:  5'- uGCUGGUGGUCGUCGGcgaagauggugaGGUCCagcagcGUCUg -3'
miRNA:   3'- -CGACCAUUAGCAGCC------------UCGGGcu----CAGA- -5'
14349 3' -54.5 NC_003521.1 + 115054 0.67 0.97423
Target:  5'- uUUGGguccaCGUCGGAgaaGCCCGAcGUCg -3'
miRNA:   3'- cGACCauua-GCAGCCU---CGGGCU-CAGa -5'
14349 3' -54.5 NC_003521.1 + 117007 0.76 0.580975
Target:  5'- aGCUGGUcggCGUgaCGGAGCgCGAGUCg -3'
miRNA:   3'- -CGACCAuuaGCA--GCCUCGgGCUCAGa -5'
14349 3' -54.5 NC_003521.1 + 118403 0.67 0.965708
Target:  5'- gGCguuGUGGUCGUCGc-GUCCGGGUCg -3'
miRNA:   3'- -CGac-CAUUAGCAGCcuCGGGCUCAGa -5'
14349 3' -54.5 NC_003521.1 + 120988 0.66 0.978981
Target:  5'- aGCUcGUccUCGUCGGAGUCgGAGcCg -3'
miRNA:   3'- -CGAcCAuuAGCAGCCUCGGgCUCaGa -5'
14349 3' -54.5 NC_003521.1 + 124076 0.7 0.90052
Target:  5'- -aUGGUGucGUCGUCGG-GCCCGAc--- -3'
miRNA:   3'- cgACCAU--UAGCAGCCuCGGGCUcaga -5'
14349 3' -54.5 NC_003521.1 + 124635 0.66 0.981097
Target:  5'- aGCaGGUAGUUGUCGaucaCCGGGUCg -3'
miRNA:   3'- -CGaCCAUUAGCAGCcucgGGCUCAGa -5'
14349 3' -54.5 NC_003521.1 + 127280 0.72 0.819645
Target:  5'- cGCUGGUGGUCGUCccGGCgCGAGg-- -3'
miRNA:   3'- -CGACCAUUAGCAGccUCGgGCUCaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.