Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14349 | 3' | -54.5 | NC_003521.1 | + | 39234 | 1.09 | 0.006594 |
Target: 5'- aGCUGGUAAUCGUCGGAGCCCGAGUCUu -3' miRNA: 3'- -CGACCAUUAGCAGCCUCGGGCUCAGA- -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 155450 | 0.66 | 0.98305 |
Target: 5'- cGCUGGgcgAGUCG-CaGcAGCCCGucgaGGUCUg -3' miRNA: 3'- -CGACCa--UUAGCaGcC-UCGGGC----UCAGA- -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 76164 | 0.66 | 0.981097 |
Target: 5'- cGCaGGUAcagGUCGUCGcGGGCCUGcGUg- -3' miRNA: 3'- -CGaCCAU---UAGCAGC-CUCGGGCuCAga -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 124635 | 0.66 | 0.981097 |
Target: 5'- aGCaGGUAGUUGUCGaucaCCGGGUCg -3' miRNA: 3'- -CGaCCAUUAGCAGCcucgGGCUCAGa -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 120988 | 0.66 | 0.978981 |
Target: 5'- aGCUcGUccUCGUCGGAGUCgGAGcCg -3' miRNA: 3'- -CGAcCAuuAGCAGCCUCGGgCUCaGa -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 168755 | 0.66 | 0.976694 |
Target: 5'- cCUGGUGGUCcgccuccuGUCGGAaGCCgGAGa-- -3' miRNA: 3'- cGACCAUUAG--------CAGCCU-CGGgCUCaga -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 115054 | 0.67 | 0.97423 |
Target: 5'- uUUGGguccaCGUCGGAgaaGCCCGAcGUCg -3' miRNA: 3'- cGACCauua-GCAGCCU---CGGGCU-CAGa -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 139158 | 0.67 | 0.971581 |
Target: 5'- uCUGGUGAagGUggaGGAGCCgGuGUCg -3' miRNA: 3'- cGACCAUUagCAg--CCUCGGgCuCAGa -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 98481 | 0.68 | 0.947417 |
Target: 5'- -gUGGUGGUCGUCGuGGGCaaCGAGggCUg -3' miRNA: 3'- cgACCAUUAGCAGC-CUCGg-GCUCa-GA- -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 137924 | 0.69 | 0.923622 |
Target: 5'- gGCUGGcgGGUCG-CGGuucccuGCCCGAGg-- -3' miRNA: 3'- -CGACCa-UUAGCaGCCu-----CGGGCUCaga -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 124076 | 0.7 | 0.90052 |
Target: 5'- -aUGGUGucGUCGUCGG-GCCCGAc--- -3' miRNA: 3'- cgACCAU--UAGCAGCCuCGGGCUcaga -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 99377 | 0.72 | 0.827936 |
Target: 5'- uGCUGGUGGUCGUCGGcgaagauggugaGGUCCagcagcGUCUg -3' miRNA: 3'- -CGACCAUUAGCAGCC------------UCGGGcu----CAGA- -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 45298 | 0.73 | 0.766774 |
Target: 5'- cGCUGGgccaggaGcCGGAGCCCGAG-CUg -3' miRNA: 3'- -CGACCauuag--CaGCCUCGGGCUCaGA- -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 117007 | 0.76 | 0.580975 |
Target: 5'- aGCUGGUcggCGUgaCGGAGCgCGAGUCg -3' miRNA: 3'- -CGACCAuuaGCA--GCCUCGgGCUCAGa -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 168021 | 0.68 | 0.951504 |
Target: 5'- uGCUGGUGGUgGUaGGcGUgCGGGUCUu -3' miRNA: 3'- -CGACCAUUAgCAgCCuCGgGCUCAGA- -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 49979 | 0.68 | 0.947417 |
Target: 5'- gGCgGGUgGGUCGagGGAGC-CGGGUCg -3' miRNA: 3'- -CGaCCA-UUAGCagCCUCGgGCUCAGa -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 34632 | 0.68 | 0.947417 |
Target: 5'- aGCUGGUGAUCGugcUCGcGGCCCuGGcCg -3' miRNA: 3'- -CGACCAUUAGC---AGCcUCGGGcUCaGa -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 213473 | 0.68 | 0.938575 |
Target: 5'- cCUGGUGcUCca-GGAGCCCGAGg-- -3' miRNA: 3'- cGACCAUuAGcagCCUCGGGCUCaga -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 165482 | 0.7 | 0.906631 |
Target: 5'- aGgUGGUAGUCGUCGcGGGCCgccGUCa -3' miRNA: 3'- -CgACCAUUAGCAGC-CUCGGgcuCAGa -5' |
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14349 | 3' | -54.5 | NC_003521.1 | + | 198163 | 0.66 | 0.981097 |
Target: 5'- aCUGaGUcGUCGUUGGAGaaguCCCGGGUa- -3' miRNA: 3'- cGAC-CAuUAGCAGCCUC----GGGCUCAga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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