miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1436 3' -57.4 NC_001335.1 + 46468 0.66 0.619195
Target:  5'- cGGCCUgGGCGaaGCCUGCgauccaCGACCggCGGu -3'
miRNA:   3'- -CUGGAgCCGU--UGGGUGa-----GCUGGa-GCU- -5'
1436 3' -57.4 NC_001335.1 + 32906 0.66 0.619194
Target:  5'- cGGCCUCGGCugcuguGCgCgACUCGAUggCGGu -3'
miRNA:   3'- -CUGGAGCCGu-----UG-GgUGAGCUGgaGCU- -5'
1436 3' -57.4 NC_001335.1 + 37856 0.66 0.618109
Target:  5'- gGGCgUUCGGCAGCgucuucgCCAC-CGACCgggCGAa -3'
miRNA:   3'- -CUG-GAGCCGUUG-------GGUGaGCUGGa--GCU- -5'
1436 3' -57.4 NC_001335.1 + 15995 0.66 0.608351
Target:  5'- cGGCCUUGGCcugGGCCgCAUcgagaugaccgUUGAUCUCGAc -3'
miRNA:   3'- -CUGGAGCCG---UUGG-GUG-----------AGCUGGAGCU- -5'
1436 3' -57.4 NC_001335.1 + 22904 0.66 0.608351
Target:  5'- cGACCgUCGGCAucACCgACggCGugUUCGu -3'
miRNA:   3'- -CUGG-AGCCGU--UGGgUGa-GCugGAGCu -5'
1436 3' -57.4 NC_001335.1 + 3116 0.66 0.597528
Target:  5'- cGCCUgucgggucagCGGguGCUCGUUCGACUUCGAg -3'
miRNA:   3'- cUGGA----------GCCguUGGGUGAGCUGGAGCU- -5'
1436 3' -57.4 NC_001335.1 + 37188 0.66 0.586733
Target:  5'- -cCCUUGGgAuaCCGCUCGuCCUCGGg -3'
miRNA:   3'- cuGGAGCCgUugGGUGAGCuGGAGCU- -5'
1436 3' -57.4 NC_001335.1 + 46852 0.66 0.585656
Target:  5'- cGACCUgGGCcaucuccAGCCCguACUUGGCCaucagcUCGAa -3'
miRNA:   3'- -CUGGAgCCG-------UUGGG--UGAGCUGG------AGCU- -5'
1436 3' -57.4 NC_001335.1 + 38265 0.66 0.575976
Target:  5'- aGACCgaacCGGCuuaguUCCGCUCGGCCggccagcccgCGAc -3'
miRNA:   3'- -CUGGa---GCCGuu---GGGUGAGCUGGa---------GCU- -5'
1436 3' -57.4 NC_001335.1 + 8788 0.66 0.575975
Target:  5'- aGCgUCGGUguAGCCCAgUgGuGCCUCGAu -3'
miRNA:   3'- cUGgAGCCG--UUGGGUgAgC-UGGAGCU- -5'
1436 3' -57.4 NC_001335.1 + 32006 0.66 0.574902
Target:  5'- --gCUCGGUcagcaccGACCUGCU-GGCCUCGAu -3'
miRNA:   3'- cugGAGCCG-------UUGGGUGAgCUGGAGCU- -5'
1436 3' -57.4 NC_001335.1 + 20498 0.67 0.544003
Target:  5'- cAUCggUGGCGACCUGCU-GACCUCGu -3'
miRNA:   3'- cUGGa-GCCGUUGGGUGAgCUGGAGCu -5'
1436 3' -57.4 NC_001335.1 + 34461 0.67 0.544003
Target:  5'- cGACCagcgCaGCAGCCCAgcccuCUCGugaguCCUCGAu -3'
miRNA:   3'- -CUGGa---GcCGUUGGGU-----GAGCu----GGAGCU- -5'
1436 3' -57.4 NC_001335.1 + 9176 0.67 0.53347
Target:  5'- uGAUCuUCGGCAucaaGCCCGaagagaUCGGCgUCGAc -3'
miRNA:   3'- -CUGG-AGCCGU----UGGGUg-----AGCUGgAGCU- -5'
1436 3' -57.4 NC_001335.1 + 2868 0.67 0.53347
Target:  5'- cGACCgacUGGCAgaugGCCCgACUCGcCCUCu- -3'
miRNA:   3'- -CUGGa--GCCGU----UGGG-UGAGCuGGAGcu -5'
1436 3' -57.4 NC_001335.1 + 14364 0.67 0.502336
Target:  5'- cGACCUCaGCaAGCCCGa--GACCUgGAc -3'
miRNA:   3'- -CUGGAGcCG-UUGGGUgagCUGGAgCU- -5'
1436 3' -57.4 NC_001335.1 + 21613 0.68 0.492133
Target:  5'- cGACCUCGGCua-UCGCUgGGCCggGGg -3'
miRNA:   3'- -CUGGAGCCGuugGGUGAgCUGGagCU- -5'
1436 3' -57.4 NC_001335.1 + 2403 0.68 0.482028
Target:  5'- cGGCCUagcCGGCccAGCUCACUccuugcCGACCUCGc -3'
miRNA:   3'- -CUGGA---GCCG--UUGGGUGA------GCUGGAGCu -5'
1436 3' -57.4 NC_001335.1 + 27302 0.68 0.472023
Target:  5'- uGGCCUCGGCGcGgUCACg-GGCCUCGu -3'
miRNA:   3'- -CUGGAGCCGU-UgGGUGagCUGGAGCu -5'
1436 3' -57.4 NC_001335.1 + 32237 0.68 0.471029
Target:  5'- cGACCUCGaauccgaugucccGCAACgCACccggaUCGAUCUCGGu -3'
miRNA:   3'- -CUGGAGC-------------CGUUGgGUG-----AGCUGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.