miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14360 5' -59.9 NC_003521.1 + 106569 0.66 0.843847
Target:  5'- -aACCUGCaccGGGUCAcccuGGCCGaGggcGGCgCg -3'
miRNA:   3'- gaUGGACG---CCCAGU----UCGGC-Ca--CCGgG- -5'
14360 5' -59.9 NC_003521.1 + 112676 0.66 0.836148
Target:  5'- cCUGCCUGCaGGccuucgcCGAGCgCGGgccGCCCu -3'
miRNA:   3'- -GAUGGACGcCCa------GUUCG-GCCac-CGGG- -5'
14360 5' -59.9 NC_003521.1 + 112979 0.69 0.695234
Target:  5'- cCUGCCcGaCGGG-CuggcGCCGG-GGCCCu -3'
miRNA:   3'- -GAUGGaC-GCCCaGuu--CGGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 113324 0.68 0.751175
Target:  5'- -gACCUGCuGGGcCAAgacGCCGGggGGCUUc -3'
miRNA:   3'- gaUGGACG-CCCaGUU---CGGCCa-CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 113687 0.7 0.646283
Target:  5'- -cGCCUGCGGGcugggacucaaccUCAAgacgcuGCUGGUGGaCCUc -3'
miRNA:   3'- gaUGGACGCCC-------------AGUU------CGGCCACC-GGG- -5'
14360 5' -59.9 NC_003521.1 + 122509 0.67 0.812081
Target:  5'- -gGCCaacgcggcgGCGGG-CAGGCCGGcGGCg- -3'
miRNA:   3'- gaUGGa--------CGCCCaGUUCGGCCaCCGgg -5'
14360 5' -59.9 NC_003521.1 + 123380 0.67 0.820258
Target:  5'- -cACCgacagGCGGcuaGUCAGGCCGcGcGGaCCCg -3'
miRNA:   3'- gaUGGa----CGCC---CAGUUCGGC-CaCC-GGG- -5'
14360 5' -59.9 NC_003521.1 + 123453 0.69 0.714151
Target:  5'- -cGCCguaGCGGGgaccgCGGGuuGGcgacUGGCCCc -3'
miRNA:   3'- gaUGGa--CGCCCa----GUUCggCC----ACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 124191 0.67 0.777112
Target:  5'- cCUGCCgGCuGGGggUGAGCgGGcccuuucUGGCCCg -3'
miRNA:   3'- -GAUGGaCG-CCCa-GUUCGgCC-------ACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 125831 0.66 0.858728
Target:  5'- --gUCUGCGcGUCGGGCucgCGGUGGUCg -3'
miRNA:   3'- gauGGACGCcCAGUUCG---GCCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 128507 0.69 0.692379
Target:  5'- -gGCCUGCgacagcgagucgcuGGG-CAGGUgCGGcUGGCCCg -3'
miRNA:   3'- gaUGGACG--------------CCCaGUUCG-GCC-ACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 137518 0.66 0.858728
Target:  5'- -cGCCUGCuGGaGUaccGGCgcgUGGUGGCCUa -3'
miRNA:   3'- gaUGGACG-CC-CAgu-UCG---GCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 138393 0.66 0.828282
Target:  5'- -gGCCUGCGGcgcGUCuggaucGCCGuGUGGaCCa -3'
miRNA:   3'- gaUGGACGCC---CAGuu----CGGC-CACCgGG- -5'
14360 5' -59.9 NC_003521.1 + 139313 0.69 0.685701
Target:  5'- -cGCCUGCuGGUC-GGCCGcGUcuGGCCg -3'
miRNA:   3'- gaUGGACGcCCAGuUCGGC-CA--CCGGg -5'
14360 5' -59.9 NC_003521.1 + 144899 0.74 0.417486
Target:  5'- ---gCUGCGGGcccacggCAuGCCGGUGGCCg -3'
miRNA:   3'- gaugGACGCCCa------GUuCGGCCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 145084 0.67 0.820258
Target:  5'- aCUACCUGUGGcUCAGccgccuGCUGGaccUGGCgCCu -3'
miRNA:   3'- -GAUGGACGCCcAGUU------CGGCC---ACCG-GG- -5'
14360 5' -59.9 NC_003521.1 + 145361 0.66 0.858001
Target:  5'- gUGCCacgugaUGCacGGGcgCGAGCCGGUgcgcgacGGCCUg -3'
miRNA:   3'- gAUGG------ACG--CCCa-GUUCGGCCA-------CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 148664 0.67 0.786706
Target:  5'- -gACCccCGGG-CGAGCCGGUGGaaggagCCg -3'
miRNA:   3'- gaUGGacGCCCaGUUCGGCCACCg-----GG- -5'
14360 5' -59.9 NC_003521.1 + 149423 0.68 0.750265
Target:  5'- --cCCUGUGGGccgggauUUggGUCGGggguccgGGCCCg -3'
miRNA:   3'- gauGGACGCCC-------AGuuCGGCCa------CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 150481 0.66 0.865897
Target:  5'- -cGCCUgGUGGGgcccuUCAGcuuuuacggcGCCGGcggGGCCCu -3'
miRNA:   3'- gaUGGA-CGCCC-----AGUU----------CGGCCa--CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.