miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14360 5' -59.9 NC_003521.1 + 45729 0.66 0.828282
Target:  5'- uCUGCgggacGCGGGUCAGGCCGGguuuuguaGCgCg -3'
miRNA:   3'- -GAUGga---CGCCCAGUUCGGCCac------CGgG- -5'
14360 5' -59.9 NC_003521.1 + 46448 0.67 0.795298
Target:  5'- -gGgCUGCGGG---GGCUGGUcGGCCUc -3'
miRNA:   3'- gaUgGACGCCCaguUCGGCCA-CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 52588 0.73 0.477676
Target:  5'- -----cGCGGG-C-AGCUGGUGGCCCg -3'
miRNA:   3'- gauggaCGCCCaGuUCGGCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 56427 0.68 0.760217
Target:  5'- gUACUcGC-GGUCGaaGGCCGccucGUGGCCCa -3'
miRNA:   3'- gAUGGaCGcCCAGU--UCGGC----CACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 59699 0.67 0.786706
Target:  5'- -aACCUGgacuCGGGUC--GCCuGGUGGCgCa -3'
miRNA:   3'- gaUGGAC----GCCCAGuuCGG-CCACCGgG- -5'
14360 5' -59.9 NC_003521.1 + 66765 0.68 0.769158
Target:  5'- --uCCcGCGGGUgAuGCCGccGGCCCa -3'
miRNA:   3'- gauGGaCGCCCAgUuCGGCcaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 67664 0.66 0.836148
Target:  5'- aCUGCCUGUGGcUgGAGCUGaa-GCCCa -3'
miRNA:   3'- -GAUGGACGCCcAgUUCGGCcacCGGG- -5'
14360 5' -59.9 NC_003521.1 + 74509 0.67 0.812081
Target:  5'- gCUGCUggagcagaGCGGcaUCAAGCUGGUGgaGCCCu -3'
miRNA:   3'- -GAUGGa-------CGCCc-AGUUCGGCCAC--CGGG- -5'
14360 5' -59.9 NC_003521.1 + 77956 0.73 0.460026
Target:  5'- --cCCUGCuGGGUCuugGAGCCGGccgcgGGCUCg -3'
miRNA:   3'- gauGGACG-CCCAG---UUCGGCCa----CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 82746 0.67 0.820258
Target:  5'- -cGCUUGCGGGaCGAGaucacgcgcgaCCGGcgGGCCg -3'
miRNA:   3'- gaUGGACGCCCaGUUC-----------GGCCa-CCGGg -5'
14360 5' -59.9 NC_003521.1 + 84093 0.67 0.803759
Target:  5'- -gGCCgugcGCGaGGUCAGGCCGuagucgauaGUGGUgCa -3'
miRNA:   3'- gaUGGa---CGC-CCAGUUCGGC---------CACCGgG- -5'
14360 5' -59.9 NC_003521.1 + 88082 0.67 0.786706
Target:  5'- gCUGCCcGUGGaggaCAaccGGCUGGUGGCCa -3'
miRNA:   3'- -GAUGGaCGCCca--GU---UCGGCCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 88663 0.69 0.666524
Target:  5'- -gGCC-GCcaGGUCGgugGGCCGGcGGCCCg -3'
miRNA:   3'- gaUGGaCGc-CCAGU---UCGGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 88717 0.66 0.865897
Target:  5'- gUACUUGagaCGGGUCuccucgcaGAGCCGGcgcacgucgccgUGGUCCu -3'
miRNA:   3'- gAUGGAC---GCCCAG--------UUCGGCC------------ACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 88780 0.75 0.385232
Target:  5'- -gACCUGCGGGUgAAGCaccgcugcggccUGGUGaaGCCCg -3'
miRNA:   3'- gaUGGACGCCCAgUUCG------------GCCAC--CGGG- -5'
14360 5' -59.9 NC_003521.1 + 95154 0.67 0.820258
Target:  5'- -cGCCgacgGCaaGGaGUC-GGCCGGccgGGCCCa -3'
miRNA:   3'- gaUGGa---CG--CC-CAGuUCGGCCa--CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 97214 0.67 0.820258
Target:  5'- gUGCa-GCaGG-CAgcAGCCGGUGGCCg -3'
miRNA:   3'- gAUGgaCGcCCaGU--UCGGCCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 99901 0.68 0.760217
Target:  5'- --uCgUGCGGGUUGA-CCGGUaGCCCg -3'
miRNA:   3'- gauGgACGCCCAGUUcGGCCAcCGGG- -5'
14360 5' -59.9 NC_003521.1 + 100141 0.67 0.786706
Target:  5'- --uCCUGCGGGa-AGGCCGuGgGGCUCu -3'
miRNA:   3'- gauGGACGCCCagUUCGGC-CaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 100227 0.7 0.656895
Target:  5'- -gGCCgGCGaGGUgGAGCUGGgcgagGuGCCCg -3'
miRNA:   3'- gaUGGaCGC-CCAgUUCGGCCa----C-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.