miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14360 5' -59.9 NC_003521.1 + 1959 0.66 0.858728
Target:  5'- -gACCcGCGGGaCAcccAGCCGGcGcGCCUc -3'
miRNA:   3'- gaUGGaCGCCCaGU---UCGGCCaC-CGGG- -5'
14360 5' -59.9 NC_003521.1 + 6707 0.67 0.820258
Target:  5'- -aGCgCUGCuGGGUCucGCCGuGgugcagGGCCUg -3'
miRNA:   3'- gaUG-GACG-CCCAGuuCGGC-Ca-----CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 7961 0.72 0.523175
Target:  5'- -cGCC-GCGGuGUCGcGGCCGGgagGGUCCg -3'
miRNA:   3'- gaUGGaCGCC-CAGU-UCGGCCa--CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 13868 0.69 0.679962
Target:  5'- --cUCUGCGGGcggcgccgccauggaUUucGCCGGggGGCCCg -3'
miRNA:   3'- gauGGACGCCC---------------AGuuCGGCCa-CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 19476 0.71 0.589377
Target:  5'- ---gCUGCGcGGcCAGGUgcaGGUGGCCCg -3'
miRNA:   3'- gaugGACGC-CCaGUUCGg--CCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 19906 0.74 0.401153
Target:  5'- -gGCgUGCGGGagcGGCUGGUGGUCCu -3'
miRNA:   3'- gaUGgACGCCCaguUCGGCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 22456 0.72 0.541845
Target:  5'- aUACCUGCGucgcuuGG-CGAGCgGGUGGCgCu -3'
miRNA:   3'- gAUGGACGC------CCaGUUCGgCCACCGgG- -5'
14360 5' -59.9 NC_003521.1 + 28331 0.76 0.332897
Target:  5'- -gGCCUGCGGacc--GCCGGUGGCCg -3'
miRNA:   3'- gaUGGACGCCcaguuCGGCCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 29071 0.66 0.865897
Target:  5'- -gGCCUuccugGUGGGcaUCGAGCUcauGGUGGCgCa -3'
miRNA:   3'- gaUGGA-----CGCCC--AGUUCGG---CCACCGgG- -5'
14360 5' -59.9 NC_003521.1 + 29119 0.68 0.760217
Target:  5'- -cGCCacgGCGG--CAAGCUGGaGGCCCu -3'
miRNA:   3'- gaUGGa--CGCCcaGUUCGGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 32191 0.71 0.570242
Target:  5'- ---gCUGCGGGUCGGGCaUGGUggggauGGCUCg -3'
miRNA:   3'- gaugGACGCCCAGUUCG-GCCA------CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 34219 0.72 0.545606
Target:  5'- -gACC-GUGGGUCGccgacaugucgcgauAGCCGG-GGCCUg -3'
miRNA:   3'- gaUGGaCGCCCAGU---------------UCGGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 34460 0.72 0.513933
Target:  5'- -gGCCUGgGGGUCGucGCCGcaGGCCa -3'
miRNA:   3'- gaUGGACgCCCAGUu-CGGCcaCCGGg -5'
14360 5' -59.9 NC_003521.1 + 36666 0.71 0.56073
Target:  5'- gUACgUGgGGGUCucggccgagcugAGGCCGGgcuccggcgccUGGCCCg -3'
miRNA:   3'- gAUGgACgCCCAG------------UUCGGCC-----------ACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 38235 0.68 0.760217
Target:  5'- -gGCCUcgGCGGG-CGGGgCGGagacgcGGCCCa -3'
miRNA:   3'- gaUGGA--CGCCCaGUUCgGCCa-----CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 39216 0.69 0.70472
Target:  5'- -aGCagcGCGGGcUCGGGgacagCGGUGGCCCg -3'
miRNA:   3'- gaUGga-CGCCC-AGUUCg----GCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 39540 0.68 0.760217
Target:  5'- -----aGCuGGcgCAGGUCGGUGGCCCc -3'
miRNA:   3'- gauggaCGcCCa-GUUCGGCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 40891 0.68 0.772705
Target:  5'- -gACCgggGCGGGggucaguuuaauagCGAGgCGGgggcGGCCCg -3'
miRNA:   3'- gaUGGa--CGCCCa-------------GUUCgGCCa---CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 43821 0.67 0.820258
Target:  5'- -aGCagcCGGGUCAGccgccGCCGGccgcgGGCCCg -3'
miRNA:   3'- gaUGgacGCCCAGUU-----CGGCCa----CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 44078 1.12 0.001428
Target:  5'- cCUACCUGCGGGUCAAGCCGGUGGCCCa -3'
miRNA:   3'- -GAUGGACGCCCAGUUCGGCCACCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.