miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14360 5' -59.9 NC_003521.1 + 113324 0.68 0.751175
Target:  5'- -gACCUGCuGGGcCAAgacGCCGGggGGCUUc -3'
miRNA:   3'- gaUGGACG-CCCaGUU---CGGCCa-CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 151784 0.7 0.647248
Target:  5'- -cGCCUGCaGGUacAGCaugaaGGUGGCCg -3'
miRNA:   3'- gaUGGACGcCCAguUCGg----CCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 180855 0.7 0.647248
Target:  5'- -aGCC-GCGGGUCAGGCgGGcguugUGGCg- -3'
miRNA:   3'- gaUGGaCGCCCAGUUCGgCC-----ACCGgg -5'
14360 5' -59.9 NC_003521.1 + 100227 0.7 0.656895
Target:  5'- -gGCCgGCGaGGUgGAGCUGGgcgagGuGCCCg -3'
miRNA:   3'- gaUGGaCGC-CCAgUUCGGCCa----C-CGGG- -5'
14360 5' -59.9 NC_003521.1 + 88663 0.69 0.666524
Target:  5'- -gGCC-GCcaGGUCGgugGGCCGGcGGCCCg -3'
miRNA:   3'- gaUGGaCGc-CCAGU---UCGGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 128507 0.69 0.692379
Target:  5'- -gGCCUGCgacagcgagucgcuGGG-CAGGUgCGGcUGGCCCg -3'
miRNA:   3'- gaUGGACG--------------CCCaGUUCG-GCC-ACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 239444 0.69 0.70472
Target:  5'- -aGCagcGCGGGcUCGGGgacagCGGUGGCCCg -3'
miRNA:   3'- gaUGga-CGCCC-AGUUCg----GCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 153422 0.69 0.714151
Target:  5'- -cACCgGCGuGGUCAgcagcAGCCGGUcgcgcucguaGGCCa -3'
miRNA:   3'- gaUGGaCGC-CCAGU-----UCGGCCA----------CCGGg -5'
14360 5' -59.9 NC_003521.1 + 168157 0.68 0.731892
Target:  5'- -gGCCUGCGGcguaugcggcauaGUCugcgugauGAGCUGcUGGCCCg -3'
miRNA:   3'- gaUGGACGCC-------------CAG--------UUCGGCcACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 177985 0.7 0.618271
Target:  5'- -cACCUGcCGGGUCAgagAGCgGGccauGCCCa -3'
miRNA:   3'- gaUGGAC-GCCCAGU---UCGgCCac--CGGG- -5'
14360 5' -59.9 NC_003521.1 + 32191 0.71 0.570242
Target:  5'- ---gCUGCGGGUCGGGCaUGGUggggauGGCUCg -3'
miRNA:   3'- gaugGACGCCCAGUUCG-GCCA------CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 196883 0.71 0.551263
Target:  5'- -cACC-GCGGGUgAGGCCGG-GGCg- -3'
miRNA:   3'- gaUGGaCGCCCAgUUCGGCCaCCGgg -5'
14360 5' -59.9 NC_003521.1 + 28331 0.76 0.332897
Target:  5'- -gGCCUGCGGacc--GCCGGUGGCCg -3'
miRNA:   3'- gaUGGACGCCcaguuCGGCCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 19906 0.74 0.401153
Target:  5'- -gGCgUGCGGGagcGGCUGGUGGUCCu -3'
miRNA:   3'- gaUGgACGCCCaguUCGGCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 144899 0.74 0.417486
Target:  5'- ---gCUGCGGGcccacggCAuGCCGGUGGCCg -3'
miRNA:   3'- gaugGACGCCCa------GUuCGGCCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 52588 0.73 0.477676
Target:  5'- -----cGCGGG-C-AGCUGGUGGCCCg -3'
miRNA:   3'- gauggaCGCCCaGuUCGGCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 192167 0.73 0.486626
Target:  5'- --gUCUGCGGuGUCAGcGCCGGUcgcGGCCa -3'
miRNA:   3'- gauGGACGCC-CAGUU-CGGCCA---CCGGg -5'
14360 5' -59.9 NC_003521.1 + 153076 0.72 0.495655
Target:  5'- -cGCC-GcCGGGgccCGGGCCGG-GGCCCa -3'
miRNA:   3'- gaUGGaC-GCCCa--GUUCGGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 34460 0.72 0.513933
Target:  5'- -gGCCUGgGGGUCGucGCCGcaGGCCa -3'
miRNA:   3'- gaUGGACgCCCAGUu-CGGCcaCCGGg -5'
14360 5' -59.9 NC_003521.1 + 22456 0.72 0.541845
Target:  5'- aUACCUGCGucgcuuGG-CGAGCgGGUGGCgCu -3'
miRNA:   3'- gAUGGACGC------CCaGUUCGgCCACCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.