miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14360 5' -59.9 NC_003521.1 + 195577 0.76 0.332897
Target:  5'- -cGCUUGgGGGUCAGGCCcgucugccgGGcGGCCCu -3'
miRNA:   3'- gaUGGACgCCCAGUUCGG---------CCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 112979 0.69 0.695234
Target:  5'- cCUGCCcGaCGGG-CuggcGCCGG-GGCCCu -3'
miRNA:   3'- -GAUGGaC-GCCCaGuu--CGGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 39216 0.69 0.70472
Target:  5'- -aGCagcGCGGGcUCGGGgacagCGGUGGCCCg -3'
miRNA:   3'- gaUGga-CGCCC-AGUUCg----GCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 195346 0.66 0.865897
Target:  5'- gCUGCCguggugGUGGGcCGGGUgaaGGUGacGCCCg -3'
miRNA:   3'- -GAUGGa-----CGCCCaGUUCGg--CCAC--CGGG- -5'
14360 5' -59.9 NC_003521.1 + 77956 0.73 0.460026
Target:  5'- --cCCUGCuGGGUCuugGAGCCGGccgcgGGCUCg -3'
miRNA:   3'- gauGGACG-CCCAG---UUCGGCCa----CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 156174 0.72 0.495655
Target:  5'- -cGCCUGUGcGGcaUCucGCCGGUGGCgCg -3'
miRNA:   3'- gaUGGACGC-CC--AGuuCGGCCACCGgG- -5'
14360 5' -59.9 NC_003521.1 + 7961 0.72 0.523175
Target:  5'- -cGCC-GCGGuGUCGcGGCCGGgagGGUCCg -3'
miRNA:   3'- gaUGGaCGCC-CAGU-UCGGCCa--CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 34219 0.72 0.545606
Target:  5'- -gACC-GUGGGUCGccgacaugucgcgauAGCCGG-GGCCUg -3'
miRNA:   3'- gaUGGaCGCCCAGU---------------UCGGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 207272 0.71 0.598988
Target:  5'- gUGCCUGCG--UCAGGCCGGccGCCUu -3'
miRNA:   3'- gAUGGACGCccAGUUCGGCCacCGGG- -5'
14360 5' -59.9 NC_003521.1 + 139313 0.69 0.685701
Target:  5'- -cGCCUGCuGGUC-GGCCGcGUcuGGCCg -3'
miRNA:   3'- gaUGGACGcCCAGuUCGGC-CA--CCGGg -5'
14360 5' -59.9 NC_003521.1 + 181199 0.7 0.627929
Target:  5'- -cGCCUGCGagccgcGGUCGccGCCGG-GGCCg -3'
miRNA:   3'- gaUGGACGC------CCAGUu-CGGCCaCCGGg -5'
14360 5' -59.9 NC_003521.1 + 19476 0.71 0.589377
Target:  5'- ---gCUGCGcGGcCAGGUgcaGGUGGCCCg -3'
miRNA:   3'- gaugGACGC-CCaGUUCGg--CCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 187617 0.75 0.369736
Target:  5'- -gGCCUGcCGGG-CGAGCCGGgccgcgcgccgcUGGCCa -3'
miRNA:   3'- gaUGGAC-GCCCaGUUCGGCC------------ACCGGg -5'
14360 5' -59.9 NC_003521.1 + 113687 0.7 0.646283
Target:  5'- -cGCCUGCGGGcugggacucaaccUCAAgacgcuGCUGGUGGaCCUc -3'
miRNA:   3'- gaUGGACGCCC-------------AGUU------CGGCCACC-GGG- -5'
14360 5' -59.9 NC_003521.1 + 88780 0.75 0.385232
Target:  5'- -gACCUGCGGGUgAAGCaccgcugcggccUGGUGaaGCCCg -3'
miRNA:   3'- gaUGGACGCCCAgUUCG------------GCCAC--CGGG- -5'
14360 5' -59.9 NC_003521.1 + 36666 0.71 0.56073
Target:  5'- gUACgUGgGGGUCucggccgagcugAGGCCGGgcuccggcgccUGGCCCg -3'
miRNA:   3'- gAUGgACgCCCAG------------UUCGGCC-----------ACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 13868 0.69 0.679962
Target:  5'- --cUCUGCGGGcggcgccgccauggaUUucGCCGGggGGCCCg -3'
miRNA:   3'- gauGGACGCCC---------------AGuuCGGCCa-CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 186905 0.69 0.70472
Target:  5'- gCUACCUGacguccaaGGGgggcGCCGGUGGCg- -3'
miRNA:   3'- -GAUGGACg-------CCCaguuCGGCCACCGgg -5'
14360 5' -59.9 NC_003521.1 + 210013 0.73 0.451331
Target:  5'- -----cGCGGGUUucGCCGGcgGGCCCu -3'
miRNA:   3'- gauggaCGCCCAGuuCGGCCa-CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 233479 0.72 0.504758
Target:  5'- -gACCUGUGGuGUUGAGCCGcGaGGCCa -3'
miRNA:   3'- gaUGGACGCC-CAGUUCGGC-CaCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.