miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14360 5' -59.9 NC_003521.1 + 44078 1.12 0.001428
Target:  5'- cCUACCUGCGGGUCAAGCCGGUGGCCCa -3'
miRNA:   3'- -GAUGGACGCCCAGUUCGGCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 195577 0.76 0.332897
Target:  5'- -cGCUUGgGGGUCAGGCCcgucugccgGGcGGCCCu -3'
miRNA:   3'- gaUGGACgCCCAGUUCGG---------CCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 28331 0.76 0.332897
Target:  5'- -gGCCUGCGGacc--GCCGGUGGCCg -3'
miRNA:   3'- gaUGGACGCCcaguuCGGCCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 187617 0.75 0.369736
Target:  5'- -gGCCUGcCGGG-CGAGCCGGgccgcgcgccgcUGGCCa -3'
miRNA:   3'- gaUGGAC-GCCCaGUUCGGCC------------ACCGGg -5'
14360 5' -59.9 NC_003521.1 + 88780 0.75 0.385232
Target:  5'- -gACCUGCGGGUgAAGCaccgcugcggccUGGUGaaGCCCg -3'
miRNA:   3'- gaUGGACGCCCAgUUCG------------GCCAC--CGGG- -5'
14360 5' -59.9 NC_003521.1 + 19906 0.74 0.401153
Target:  5'- -gGCgUGCGGGagcGGCUGGUGGUCCu -3'
miRNA:   3'- gaUGgACGCCCaguUCGGCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 144899 0.74 0.417486
Target:  5'- ---gCUGCGGGcccacggCAuGCCGGUGGCCg -3'
miRNA:   3'- gaugGACGCCCa------GUuCGGCCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 210013 0.73 0.451331
Target:  5'- -----cGCGGGUUucGCCGGcgGGCCCu -3'
miRNA:   3'- gauggaCGCCCAGuuCGGCCa-CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 77956 0.73 0.460026
Target:  5'- --cCCUGCuGGGUCuugGAGCCGGccgcgGGCUCg -3'
miRNA:   3'- gauGGACG-CCCAG---UUCGGCCa----CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 52588 0.73 0.477676
Target:  5'- -----cGCGGG-C-AGCUGGUGGCCCg -3'
miRNA:   3'- gauggaCGCCCaGuUCGGCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 192167 0.73 0.486626
Target:  5'- --gUCUGCGGuGUCAGcGCCGGUcgcGGCCa -3'
miRNA:   3'- gauGGACGCC-CAGUU-CGGCCA---CCGGg -5'
14360 5' -59.9 NC_003521.1 + 156174 0.72 0.495655
Target:  5'- -cGCCUGUGcGGcaUCucGCCGGUGGCgCg -3'
miRNA:   3'- gaUGGACGC-CC--AGuuCGGCCACCGgG- -5'
14360 5' -59.9 NC_003521.1 + 153076 0.72 0.495655
Target:  5'- -cGCC-GcCGGGgccCGGGCCGG-GGCCCa -3'
miRNA:   3'- gaUGGaC-GCCCa--GUUCGGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 233479 0.72 0.504758
Target:  5'- -gACCUGUGGuGUUGAGCCGcGaGGCCa -3'
miRNA:   3'- gaUGGACGCC-CAGUUCGGC-CaCCGGg -5'
14360 5' -59.9 NC_003521.1 + 34460 0.72 0.513933
Target:  5'- -gGCCUGgGGGUCGucGCCGcaGGCCa -3'
miRNA:   3'- gaUGGACgCCCAGUu-CGGCcaCCGGg -5'
14360 5' -59.9 NC_003521.1 + 7961 0.72 0.523175
Target:  5'- -cGCC-GCGGuGUCGcGGCCGGgagGGUCCg -3'
miRNA:   3'- gaUGGaCGCC-CAGU-UCGGCCa--CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 22456 0.72 0.541845
Target:  5'- aUACCUGCGucgcuuGG-CGAGCgGGUGGCgCu -3'
miRNA:   3'- gAUGGACGC------CCaGUUCGgCCACCGgG- -5'
14360 5' -59.9 NC_003521.1 + 34219 0.72 0.545606
Target:  5'- -gACC-GUGGGUCGccgacaugucgcgauAGCCGG-GGCCUg -3'
miRNA:   3'- gaUGGaCGCCCAGU---------------UCGGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 196883 0.71 0.551263
Target:  5'- -cACC-GCGGGUgAGGCCGG-GGCg- -3'
miRNA:   3'- gaUGGaCGCCCAgUUCGGCCaCCGgg -5'
14360 5' -59.9 NC_003521.1 + 36666 0.71 0.56073
Target:  5'- gUACgUGgGGGUCucggccgagcugAGGCCGGgcuccggcgccUGGCCCg -3'
miRNA:   3'- gAUGgACgCCCAG------------UUCGGCC-----------ACCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.