miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14360 5' -59.9 NC_003521.1 + 32191 0.71 0.570242
Target:  5'- ---gCUGCGGGUCGGGCaUGGUggggauGGCUCg -3'
miRNA:   3'- gaugGACGCCCAGUUCG-GCCA------CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 19476 0.71 0.589377
Target:  5'- ---gCUGCGcGGcCAGGUgcaGGUGGCCCg -3'
miRNA:   3'- gaugGACGC-CCaGUUCGg--CCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 207272 0.71 0.598988
Target:  5'- gUGCCUGCG--UCAGGCCGGccGCCUu -3'
miRNA:   3'- gAUGGACGCccAGUUCGGCCacCGGG- -5'
14360 5' -59.9 NC_003521.1 + 177985 0.7 0.618271
Target:  5'- -cACCUGcCGGGUCAgagAGCgGGccauGCCCa -3'
miRNA:   3'- gaUGGAC-GCCCAGU---UCGgCCac--CGGG- -5'
14360 5' -59.9 NC_003521.1 + 181199 0.7 0.627929
Target:  5'- -cGCCUGCGagccgcGGUCGccGCCGG-GGCCg -3'
miRNA:   3'- gaUGGACGC------CCAGUu-CGGCCaCCGGg -5'
14360 5' -59.9 NC_003521.1 + 179985 0.7 0.627929
Target:  5'- -cACCUGCGGG--AAGuCCuGGUGGCUa -3'
miRNA:   3'- gaUGGACGCCCagUUC-GG-CCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 113687 0.7 0.646283
Target:  5'- -cGCCUGCGGGcugggacucaaccUCAAgacgcuGCUGGUGGaCCUc -3'
miRNA:   3'- gaUGGACGCCC-------------AGUU------CGGCCACC-GGG- -5'
14360 5' -59.9 NC_003521.1 + 151784 0.7 0.647248
Target:  5'- -cGCCUGCaGGUacAGCaugaaGGUGGCCg -3'
miRNA:   3'- gaUGGACGcCCAguUCGg----CCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 180855 0.7 0.647248
Target:  5'- -aGCC-GCGGGUCAGGCgGGcguugUGGCg- -3'
miRNA:   3'- gaUGGaCGCCCAGUUCGgCC-----ACCGgg -5'
14360 5' -59.9 NC_003521.1 + 100227 0.7 0.656895
Target:  5'- -gGCCgGCGaGGUgGAGCUGGgcgagGuGCCCg -3'
miRNA:   3'- gaUGGaCGC-CCAgUUCGGCCa----C-CGGG- -5'
14360 5' -59.9 NC_003521.1 + 88663 0.69 0.666524
Target:  5'- -gGCC-GCcaGGUCGgugGGCCGGcGGCCCg -3'
miRNA:   3'- gaUGGaCGc-CCAGU---UCGGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 13868 0.69 0.679962
Target:  5'- --cUCUGCGGGcggcgccgccauggaUUucGCCGGggGGCCCg -3'
miRNA:   3'- gauGGACGCCC---------------AGuuCGGCCa-CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 139313 0.69 0.685701
Target:  5'- -cGCCUGCuGGUC-GGCCGcGUcuGGCCg -3'
miRNA:   3'- gaUGGACGcCCAGuUCGGC-CA--CCGGg -5'
14360 5' -59.9 NC_003521.1 + 128507 0.69 0.692379
Target:  5'- -gGCCUGCgacagcgagucgcuGGG-CAGGUgCGGcUGGCCCg -3'
miRNA:   3'- gaUGGACG--------------CCCaGUUCG-GCC-ACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 112979 0.69 0.695234
Target:  5'- cCUGCCcGaCGGG-CuggcGCCGG-GGCCCu -3'
miRNA:   3'- -GAUGGaC-GCCCaGuu--CGGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 239444 0.69 0.70472
Target:  5'- -aGCagcGCGGGcUCGGGgacagCGGUGGCCCg -3'
miRNA:   3'- gaUGga-CGCCC-AGUUCg----GCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 207149 0.69 0.70472
Target:  5'- uUACgUGCGGGcCAcGGCCGGUcGCUg -3'
miRNA:   3'- gAUGgACGCCCaGU-UCGGCCAcCGGg -5'
14360 5' -59.9 NC_003521.1 + 186905 0.69 0.70472
Target:  5'- gCUACCUGacguccaaGGGgggcGCCGGUGGCg- -3'
miRNA:   3'- -GAUGGACg-------CCCaguuCGGCCACCGgg -5'
14360 5' -59.9 NC_003521.1 + 39216 0.69 0.70472
Target:  5'- -aGCagcGCGGGcUCGGGgacagCGGUGGCCCg -3'
miRNA:   3'- gaUGga-CGCCC-AGUUCg----GCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 153422 0.69 0.714151
Target:  5'- -cACCgGCGuGGUCAgcagcAGCCGGUcgcgcucguaGGCCa -3'
miRNA:   3'- gaUGGaCGC-CCAGU-----UCGGCCA----------CCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.