miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14360 5' -59.9 NC_003521.1 + 95154 0.67 0.820258
Target:  5'- -cGCCgacgGCaaGGaGUC-GGCCGGccgGGCCCa -3'
miRNA:   3'- gaUGGa---CG--CC-CAGuUCGGCCa--CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 145084 0.67 0.820258
Target:  5'- aCUACCUGUGGcUCAGccgccuGCUGGaccUGGCgCCu -3'
miRNA:   3'- -GAUGGACGCCcAGUU------CGGCC---ACCG-GG- -5'
14360 5' -59.9 NC_003521.1 + 172345 0.67 0.820258
Target:  5'- --uCCUGUGGcacacGUCGGGCgGGUGGgUCa -3'
miRNA:   3'- gauGGACGCC-----CAGUUCGgCCACCgGG- -5'
14360 5' -59.9 NC_003521.1 + 123380 0.67 0.820258
Target:  5'- -cACCgacagGCGGcuaGUCAGGCCGcGcGGaCCCg -3'
miRNA:   3'- gaUGGa----CGCC---CAGUUCGGC-CaCC-GGG- -5'
14360 5' -59.9 NC_003521.1 + 6707 0.67 0.820258
Target:  5'- -aGCgCUGCuGGGUCucGCCGuGgugcagGGCCUg -3'
miRNA:   3'- gaUG-GACG-CCCAGuuCGGC-Ca-----CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 171216 0.67 0.820258
Target:  5'- -cGCuCUGCGGcaGUC-AGCgGGUGGUCa -3'
miRNA:   3'- gaUG-GACGCC--CAGuUCGgCCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 97214 0.67 0.820258
Target:  5'- gUGCa-GCaGG-CAgcAGCCGGUGGCCg -3'
miRNA:   3'- gAUGgaCGcCCaGU--UCGGCCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 161744 0.67 0.812081
Target:  5'- -cGCCaGCGuGGggGAGCUGGUG-CCCg -3'
miRNA:   3'- gaUGGaCGC-CCagUUCGGCCACcGGG- -5'
14360 5' -59.9 NC_003521.1 + 122509 0.67 0.812081
Target:  5'- -gGCCaacgcggcgGCGGG-CAGGCCGGcGGCg- -3'
miRNA:   3'- gaUGGa--------CGCCCaGUUCGGCCaCCGgg -5'
14360 5' -59.9 NC_003521.1 + 160328 0.67 0.812081
Target:  5'- -aGCC-GUGGG-C-GGCgCGGUGGCCUc -3'
miRNA:   3'- gaUGGaCGCCCaGuUCG-GCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 74509 0.67 0.812081
Target:  5'- gCUGCUggagcagaGCGGcaUCAAGCUGGUGgaGCCCu -3'
miRNA:   3'- -GAUGGa-------CGCCc-AGUUCGGCCAC--CGGG- -5'
14360 5' -59.9 NC_003521.1 + 205935 0.67 0.812081
Target:  5'- -cGCCUGCG--UCucGCUGGgcUGGCCCu -3'
miRNA:   3'- gaUGGACGCccAGuuCGGCC--ACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 203353 0.67 0.812081
Target:  5'- --cCCUGCGGcacca--CGGUGGCCCg -3'
miRNA:   3'- gauGGACGCCcaguucgGCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 195686 0.67 0.812081
Target:  5'- -gAUCUGCGGGaugUCcuGCCGGUgcacgaacauacGGCgCCg -3'
miRNA:   3'- gaUGGACGCCC---AGuuCGGCCA------------CCG-GG- -5'
14360 5' -59.9 NC_003521.1 + 166087 0.67 0.810428
Target:  5'- -gGCCauaGCGGGagCGGGCCGGcagguucacgcgGGCCUg -3'
miRNA:   3'- gaUGGa--CGCCCa-GUUCGGCCa-----------CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 213750 0.67 0.80877
Target:  5'- aCUGCCUGCgcuaccuGGGcUCGucGCUGGUgaaacgcuacuuucGGCCCc -3'
miRNA:   3'- -GAUGGACG-------CCC-AGUu-CGGCCA--------------CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 84093 0.67 0.803759
Target:  5'- -gGCCgugcGCGaGGUCAGGCCGuagucgauaGUGGUgCa -3'
miRNA:   3'- gaUGGa---CGC-CCAGUUCGGC---------CACCGgG- -5'
14360 5' -59.9 NC_003521.1 + 184348 0.67 0.795298
Target:  5'- aCUGCCUcuuCGGG-CGGGCCG-UGGCgCg -3'
miRNA:   3'- -GAUGGAc--GCCCaGUUCGGCcACCGgG- -5'
14360 5' -59.9 NC_003521.1 + 46448 0.67 0.795298
Target:  5'- -gGgCUGCGGG---GGCUGGUcGGCCUc -3'
miRNA:   3'- gaUgGACGCCCaguUCGGCCA-CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 100141 0.67 0.786706
Target:  5'- --uCCUGCGGGa-AGGCCGuGgGGCUCu -3'
miRNA:   3'- gauGGACGCCCagUUCGGC-CaCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.