miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14360 5' -59.9 NC_003521.1 + 173575 0.67 0.786706
Target:  5'- cCUGCCa-CGGGUCGAucuGCUGGUcccaGGCCa -3'
miRNA:   3'- -GAUGGacGCCCAGUU---CGGCCA----CCGGg -5'
14360 5' -59.9 NC_003521.1 + 59699 0.67 0.786706
Target:  5'- -aACCUGgacuCGGGUC--GCCuGGUGGCgCa -3'
miRNA:   3'- gaUGGAC----GCCCAGuuCGG-CCACCGgG- -5'
14360 5' -59.9 NC_003521.1 + 100141 0.67 0.786706
Target:  5'- --uCCUGCGGGa-AGGCCGuGgGGCUCu -3'
miRNA:   3'- gauGGACGCCCagUUCGGC-CaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 88082 0.67 0.786706
Target:  5'- gCUGCCcGUGGaggaCAaccGGCUGGUGGCCa -3'
miRNA:   3'- -GAUGGaCGCCca--GU---UCGGCCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 124191 0.67 0.777112
Target:  5'- cCUGCCgGCuGGGggUGAGCgGGcccuuucUGGCCCg -3'
miRNA:   3'- -GAUGGaCG-CCCa-GUUCGgCC-------ACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 40891 0.68 0.772705
Target:  5'- -gACCgggGCGGGggucaguuuaauagCGAGgCGGgggcGGCCCg -3'
miRNA:   3'- gaUGGa--CGCCCa-------------GUUCgGCCa---CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 66765 0.68 0.769158
Target:  5'- --uCCcGCGGGUgAuGCCGccGGCCCa -3'
miRNA:   3'- gauGGaCGCCCAgUuCGGCcaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 39540 0.68 0.760217
Target:  5'- -----aGCuGGcgCAGGUCGGUGGCCCc -3'
miRNA:   3'- gauggaCGcCCa-GUUCGGCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 38235 0.68 0.760217
Target:  5'- -gGCCUcgGCGGG-CGGGgCGGagacgcGGCCCa -3'
miRNA:   3'- gaUGGA--CGCCCaGUUCgGCCa-----CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 56427 0.68 0.760217
Target:  5'- gUACUcGC-GGUCGaaGGCCGccucGUGGCCCa -3'
miRNA:   3'- gAUGGaCGcCCAGU--UCGGC----CACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 238463 0.68 0.760217
Target:  5'- -gGCCUcgGCGGG-CGGGgCGGagacgcGGCCCa -3'
miRNA:   3'- gaUGGA--CGCCCaGUUCgGCCa-----CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 239767 0.68 0.760217
Target:  5'- -----aGCuGGcgCAGGUCGGUGGCCCc -3'
miRNA:   3'- gauggaCGcCCa-GUUCGGCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 29119 0.68 0.760217
Target:  5'- -cGCCacgGCGG--CAAGCUGGaGGCCCu -3'
miRNA:   3'- gaUGGa--CGCCcaGUUCGGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 99901 0.68 0.760217
Target:  5'- --uCgUGCGGGUUGA-CCGGUaGCCCg -3'
miRNA:   3'- gauGgACGCCCAGUUcGGCCAcCGGG- -5'
14360 5' -59.9 NC_003521.1 + 168736 0.68 0.751175
Target:  5'- uUAUCgGC-GGUCAgcacGGCCuGGUGGUCCg -3'
miRNA:   3'- gAUGGaCGcCCAGU----UCGG-CCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 113324 0.68 0.751175
Target:  5'- -gACCUGCuGGGcCAAgacGCCGGggGGCUUc -3'
miRNA:   3'- gaUGGACG-CCCaGUU---CGGCCa-CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 149423 0.68 0.750265
Target:  5'- --cCCUGUGGGccgggauUUggGUCGGggguccgGGCCCg -3'
miRNA:   3'- gauGGACGCCC-------AGuuCGGCCa------CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 155492 0.68 0.732819
Target:  5'- -gGCCUGCGG--CGGGCCGcG-GGCCa -3'
miRNA:   3'- gaUGGACGCCcaGUUCGGC-CaCCGGg -5'
14360 5' -59.9 NC_003521.1 + 168157 0.68 0.731892
Target:  5'- -gGCCUGCGGcguaugcggcauaGUCugcgugauGAGCUGcUGGCCCg -3'
miRNA:   3'- gaUGGACGCC-------------CAG--------UUCGGCcACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 123453 0.69 0.714151
Target:  5'- -cGCCguaGCGGGgaccgCGGGuuGGcgacUGGCCCc -3'
miRNA:   3'- gaUGGa--CGCCCa----GUUCggCC----ACCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.