miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14360 5' -59.9 NC_003521.1 + 239767 0.68 0.760217
Target:  5'- -----aGCuGGcgCAGGUCGGUGGCCCc -3'
miRNA:   3'- gauggaCGcCCa-GUUCGGCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 239444 0.69 0.70472
Target:  5'- -aGCagcGCGGGcUCGGGgacagCGGUGGCCCg -3'
miRNA:   3'- gaUGga-CGCCC-AGUUCg----GCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 238463 0.68 0.760217
Target:  5'- -gGCCUcgGCGGG-CGGGgCGGagacgcGGCCCa -3'
miRNA:   3'- gaUGGA--CGCCCaGUUCgGCCa-----CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 233479 0.72 0.504758
Target:  5'- -gACCUGUGGuGUUGAGCCGcGaGGCCa -3'
miRNA:   3'- gaUGGACGCC-CAGUUCGGC-CaCCGGg -5'
14360 5' -59.9 NC_003521.1 + 213750 0.67 0.80877
Target:  5'- aCUGCCUGCgcuaccuGGGcUCGucGCUGGUgaaacgcuacuuucGGCCCc -3'
miRNA:   3'- -GAUGGACG-------CCC-AGUu-CGGCCA--------------CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 210013 0.73 0.451331
Target:  5'- -----cGCGGGUUucGCCGGcgGGCCCu -3'
miRNA:   3'- gauggaCGCCCAGuuCGGCCa-CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 207830 0.66 0.828282
Target:  5'- -aGCCUGCGGGgcuUCAuccGCCaG-GGCUCc -3'
miRNA:   3'- gaUGGACGCCC---AGUu--CGGcCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 207272 0.71 0.598988
Target:  5'- gUGCCUGCG--UCAGGCCGGccGCCUu -3'
miRNA:   3'- gAUGGACGCccAGUUCGGCCacCGGG- -5'
14360 5' -59.9 NC_003521.1 + 207149 0.69 0.70472
Target:  5'- uUACgUGCGGGcCAcGGCCGGUcGCUg -3'
miRNA:   3'- gAUGgACGCCCaGU-UCGGCCAcCGGg -5'
14360 5' -59.9 NC_003521.1 + 206630 0.66 0.858728
Target:  5'- -cGCCcugGUGGGcCAcgauaAGCUGGUcaaguuGGCCCg -3'
miRNA:   3'- gaUGGa--CGCCCaGU-----UCGGCCA------CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 205935 0.67 0.812081
Target:  5'- -cGCCUGCG--UCucGCUGGgcUGGCCCu -3'
miRNA:   3'- gaUGGACGCccAGuuCGGCC--ACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 204125 0.66 0.828282
Target:  5'- -cACCUGCucGGGcCAGgcGCCGGa-GCCCg -3'
miRNA:   3'- gaUGGACG--CCCaGUU--CGGCCacCGGG- -5'
14360 5' -59.9 NC_003521.1 + 203353 0.67 0.812081
Target:  5'- --cCCUGCGGcacca--CGGUGGCCCg -3'
miRNA:   3'- gauGGACGCCcaguucgGCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 202186 0.66 0.858728
Target:  5'- -gACCcGCGGGaCAcccAGCCGGcGcGCCUc -3'
miRNA:   3'- gaUGGaCGCCCaGU---UCGGCCaC-CGGG- -5'
14360 5' -59.9 NC_003521.1 + 196883 0.71 0.551263
Target:  5'- -cACC-GCGGGUgAGGCCGG-GGCg- -3'
miRNA:   3'- gaUGGaCGCCCAgUUCGGCCaCCGgg -5'
14360 5' -59.9 NC_003521.1 + 195686 0.67 0.812081
Target:  5'- -gAUCUGCGGGaugUCcuGCCGGUgcacgaacauacGGCgCCg -3'
miRNA:   3'- gaUGGACGCCC---AGuuCGGCCA------------CCG-GG- -5'
14360 5' -59.9 NC_003521.1 + 195577 0.76 0.332897
Target:  5'- -cGCUUGgGGGUCAGGCCcgucugccgGGcGGCCCu -3'
miRNA:   3'- gaUGGACgCCCAGUUCGG---------CCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 195346 0.66 0.865897
Target:  5'- gCUGCCguggugGUGGGcCGGGUgaaGGUGacGCCCg -3'
miRNA:   3'- -GAUGGa-----CGCCCaGUUCGg--CCAC--CGGG- -5'
14360 5' -59.9 NC_003521.1 + 192167 0.73 0.486626
Target:  5'- --gUCUGCGGuGUCAGcGCCGGUcgcGGCCa -3'
miRNA:   3'- gauGGACGCC-CAGUU-CGGCCA---CCGGg -5'
14360 5' -59.9 NC_003521.1 + 187617 0.75 0.369736
Target:  5'- -gGCCUGcCGGG-CGAGCCGGgccgcgcgccgcUGGCCa -3'
miRNA:   3'- gaUGGAC-GCCCaGUUCGGCC------------ACCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.