miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14367 3' -52 NC_003521.1 + 47279 1.07 0.013338
Target:  5'- gUACGUUGAAGACACCUGGAAGGAGCGu -3'
miRNA:   3'- -AUGCAACUUCUGUGGACCUUCCUCGC- -5'
14367 3' -52 NC_003521.1 + 80442 0.68 0.986297
Target:  5'- gAUGgUGAAGGCGCCgaagggguucuugaGGAAGGcGGCGa -3'
miRNA:   3'- aUGCaACUUCUGUGGa-------------CCUUCC-UCGC- -5'
14367 3' -52 NC_003521.1 + 60500 0.67 0.988737
Target:  5'- cACGcUGGuAGGCuCCcGGGAGGAGCu -3'
miRNA:   3'- aUGCaACU-UCUGuGGaCCUUCCUCGc -5'
14367 3' -52 NC_003521.1 + 131899 0.67 0.990082
Target:  5'- aGCGaucUGGAGGCcauCCUGcuGAAGGAGCu -3'
miRNA:   3'- aUGCa--ACUUCUGu--GGAC--CUUCCUCGc -5'
14367 3' -52 NC_003521.1 + 167689 0.66 0.993374
Target:  5'- uUGCGgUGAcGACGCUcgUGGAGGaGGCGg -3'
miRNA:   3'- -AUGCaACUuCUGUGG--ACCUUCcUCGC- -5'
14367 3' -52 NC_003521.1 + 113567 0.66 0.994084
Target:  5'- cGCGagGAGGACGCgguggggCUGGGccucgggggcaacGGGGGCGg -3'
miRNA:   3'- aUGCaaCUUCUGUG-------GACCU-------------UCCUCGC- -5'
14367 3' -52 NC_003521.1 + 93602 0.66 0.995727
Target:  5'- aACGcUGAGGAC-CC-GGcuGGGGCGa -3'
miRNA:   3'- aUGCaACUUCUGuGGaCCuuCCUCGC- -5'
14367 3' -52 NC_003521.1 + 24155 0.66 0.996281
Target:  5'- cACGggGuacucgcGGGGCACUcGGAAaGGAGCGa -3'
miRNA:   3'- aUGCaaC-------UUCUGUGGaCCUU-CCUCGC- -5'
14367 3' -52 NC_003521.1 + 115970 0.66 0.996339
Target:  5'- gGCGUUGuccGAGACGCCcagguuguucaUGGucucgcgcAGGAGCa -3'
miRNA:   3'- aUGCAAC---UUCUGUGG-----------ACCu-------UCCUCGc -5'
14367 3' -52 NC_003521.1 + 71643 0.68 0.983845
Target:  5'- gAUGUUGAAGACcgagGCCgaguuGGAGCGg -3'
miRNA:   3'- aUGCAACUUCUG----UGGaccuuCCUCGC- -5'
14367 3' -52 NC_003521.1 + 228449 0.68 0.979785
Target:  5'- gGCGUgaAAGAgGCC-GGAGGGuAGCGa -3'
miRNA:   3'- aUGCAacUUCUgUGGaCCUUCC-UCGC- -5'
14367 3' -52 NC_003521.1 + 90533 0.7 0.959212
Target:  5'- gUACGcccacuaacaaauUUGcauACACCUGGGAGGAGUGg -3'
miRNA:   3'- -AUGC-------------AACuucUGUGGACCUUCCUCGC- -5'
14367 3' -52 NC_003521.1 + 212843 0.78 0.629282
Target:  5'- gGgGUUGAAGAU-CCUGGggGGcAGCGg -3'
miRNA:   3'- aUgCAACUUCUGuGGACCuuCC-UCGC- -5'
14367 3' -52 NC_003521.1 + 72410 0.73 0.848447
Target:  5'- aGCGgcGGAGGCACUgaGGAAGaGGGCGa -3'
miRNA:   3'- aUGCaaCUUCUGUGGa-CCUUC-CUCGC- -5'
14367 3' -52 NC_003521.1 + 235842 0.73 0.848447
Target:  5'- cGCGggauggUGAGGACACCacacggGGAGGGAGgCa -3'
miRNA:   3'- aUGCa-----ACUUCUGUGGa-----CCUUCCUC-Gc -5'
14367 3' -52 NC_003521.1 + 59646 0.72 0.878037
Target:  5'- gGCGUUGGugcggcagacgcuGGcGCGCCUGGA-GGAGCu -3'
miRNA:   3'- aUGCAACU-------------UC-UGUGGACCUuCCUCGc -5'
14367 3' -52 NC_003521.1 + 188116 0.72 0.899178
Target:  5'- gACG--GAGGACACaCUGGu-GGAGCGg -3'
miRNA:   3'- aUGCaaCUUCUGUG-GACCuuCCUCGC- -5'
14367 3' -52 NC_003521.1 + 112057 0.7 0.93858
Target:  5'- gACGccugcugGAGGACGCCgcgguggGGAucAGGGGCGg -3'
miRNA:   3'- aUGCaa-----CUUCUGUGGa------CCU--UCCUCGC- -5'
14367 3' -52 NC_003521.1 + 173368 0.7 0.955839
Target:  5'- gACGggaGGAGAUggagugCUGGGAGGAGCGg -3'
miRNA:   3'- aUGCaa-CUUCUGug----GACCUUCCUCGC- -5'
14367 3' -52 NC_003521.1 + 61813 0.7 0.958478
Target:  5'- gACGUUGcgugauuucuucgaGGGGC-CCUGGGAGG-GCGc -3'
miRNA:   3'- aUGCAAC--------------UUCUGuGGACCUUCCuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.