Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14367 | 3' | -52 | NC_003521.1 | + | 18477 | 0.7 | 0.959575 |
Target: 5'- cGCGgcGAGuGuCGCCUGGA-GGAGCu -3' miRNA: 3'- aUGCaaCUU-CuGUGGACCUuCCUCGc -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 24155 | 0.66 | 0.996281 |
Target: 5'- cACGggGuacucgcGGGGCACUcGGAAaGGAGCGa -3' miRNA: 3'- aUGCaaC-------UUCUGUGGaCCUU-CCUCGC- -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 47279 | 1.07 | 0.013338 |
Target: 5'- gUACGUUGAAGACACCUGGAAGGAGCGu -3' miRNA: 3'- -AUGCAACUUCUGUGGACCUUCCUCGC- -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 48551 | 0.67 | 0.987255 |
Target: 5'- aACGgcgUGGAGACGCCgcugGuGAAGGuGaCGg -3' miRNA: 3'- aUGCa--ACUUCUGUGGa---C-CUUCCuC-GC- -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 59646 | 0.72 | 0.878037 |
Target: 5'- gGCGUUGGugcggcagacgcuGGcGCGCCUGGA-GGAGCu -3' miRNA: 3'- aUGCAACU-------------UC-UGUGGACCUuCCUCGc -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 60500 | 0.67 | 0.988737 |
Target: 5'- cACGcUGGuAGGCuCCcGGGAGGAGCu -3' miRNA: 3'- aUGCaACU-UCUGuGGaCCUUCCUCGc -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 61813 | 0.7 | 0.958478 |
Target: 5'- gACGUUGcgugauuucuucgaGGGGC-CCUGGGAGG-GCGc -3' miRNA: 3'- aUGCAAC--------------UUCUGuGGACCUUCCuCGC- -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 71643 | 0.68 | 0.983845 |
Target: 5'- gAUGUUGAAGACcgagGCCgaguuGGAGCGg -3' miRNA: 3'- aUGCAACUUCUG----UGGaccuuCCUCGC- -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 72410 | 0.73 | 0.848447 |
Target: 5'- aGCGgcGGAGGCACUgaGGAAGaGGGCGa -3' miRNA: 3'- aUGCaaCUUCUGUGGa-CCUUC-CUCGC- -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 80442 | 0.68 | 0.986297 |
Target: 5'- gAUGgUGAAGGCGCCgaagggguucuugaGGAAGGcGGCGa -3' miRNA: 3'- aUGCaACUUCUGUGGa-------------CCUUCC-UCGC- -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 84774 | 0.66 | 0.993374 |
Target: 5'- gACGUUGuuGGCACCgccgaagcaGAGGGAGgGc -3' miRNA: 3'- aUGCAACuuCUGUGGac-------CUUCCUCgC- -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 86307 | 0.66 | 0.993374 |
Target: 5'- cGCaGUUGAGGuuggccgccaGCACCUGGAugcuGGAGg- -3' miRNA: 3'- aUG-CAACUUC----------UGUGGACCUu---CCUCgc -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 87766 | 0.67 | 0.987255 |
Target: 5'- gGCGgcgGAGGAgGCCUGGggGccGCc -3' miRNA: 3'- aUGCaa-CUUCUgUGGACCuuCcuCGc -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 87793 | 0.66 | 0.993374 |
Target: 5'- -uCGUcGGucucGGGCgGCCUGGGccAGGAGCGg -3' miRNA: 3'- auGCAaCU----UCUG-UGGACCU--UCCUCGC- -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 90533 | 0.7 | 0.959212 |
Target: 5'- gUACGcccacuaacaaauUUGcauACACCUGGGAGGAGUGg -3' miRNA: 3'- -AUGC-------------AACuucUGUGGACCUUCCUCGC- -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 93602 | 0.66 | 0.995727 |
Target: 5'- aACGcUGAGGAC-CC-GGcuGGGGCGa -3' miRNA: 3'- aUGCaACUUCUGuGGaCCuuCCUCGC- -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 100576 | 0.66 | 0.995727 |
Target: 5'- cACGagGAGGACGacgaCgcGGAGGGAGCc -3' miRNA: 3'- aUGCaaCUUCUGUg---Ga-CCUUCCUCGc -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 102722 | 0.66 | 0.995727 |
Target: 5'- gACGUaGAgcacgcAGACcucgGCCUGGGAGGgccAGCGc -3' miRNA: 3'- aUGCAaCU------UCUG----UGGACCUUCC---UCGC- -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 112057 | 0.7 | 0.93858 |
Target: 5'- gACGccugcugGAGGACGCCgcgguggGGAucAGGGGCGg -3' miRNA: 3'- aUGCaa-----CUUCUGUGGa------CCU--UCCUCGC- -5' |
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14367 | 3' | -52 | NC_003521.1 | + | 113567 | 0.66 | 0.994084 |
Target: 5'- cGCGagGAGGACGCgguggggCUGGGccucgggggcaacGGGGGCGg -3' miRNA: 3'- aUGCaaCUUCUGUG-------GACCU-------------UCCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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