miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14367 3' -52 NC_003521.1 + 115970 0.66 0.996339
Target:  5'- gGCGUUGuccGAGACGCCcagguuguucaUGGucucgcgcAGGAGCa -3'
miRNA:   3'- aUGCAAC---UUCUGUGG-----------ACCu-------UCCUCGc -5'
14367 3' -52 NC_003521.1 + 125700 0.73 0.871495
Target:  5'- gACGUagUGGAGACGCCggcGGucacgacGGGGGCGg -3'
miRNA:   3'- aUGCA--ACUUCUGUGGa--CCu------UCCUCGC- -5'
14367 3' -52 NC_003521.1 + 126682 0.67 0.987099
Target:  5'- cAgGUUGAGGACGCUgaUGGAGGcgaacaugccgguGAGCa -3'
miRNA:   3'- aUgCAACUUCUGUGG--ACCUUC-------------CUCGc -5'
14367 3' -52 NC_003521.1 + 131899 0.67 0.990082
Target:  5'- aGCGaucUGGAGGCcauCCUGcuGAAGGAGCu -3'
miRNA:   3'- aUGCa--ACUUCUGu--GGAC--CUUCCUCGc -5'
14367 3' -52 NC_003521.1 + 140463 0.7 0.947679
Target:  5'- gACGaUGAacuGGACGCCaUGGAcgaagAGGAGCu -3'
miRNA:   3'- aUGCaACU---UCUGUGG-ACCU-----UCCUCGc -5'
14367 3' -52 NC_003521.1 + 156479 0.67 0.991297
Target:  5'- gGCGgaGGAGGCGCU--GAGGGAGUa -3'
miRNA:   3'- aUGCaaCUUCUGUGGacCUUCCUCGc -5'
14367 3' -52 NC_003521.1 + 167689 0.66 0.993374
Target:  5'- uUGCGgUGAcGACGCUcgUGGAGGaGGCGg -3'
miRNA:   3'- -AUGCaACUuCUGUGG--ACCUUCcUCGC- -5'
14367 3' -52 NC_003521.1 + 173368 0.7 0.955839
Target:  5'- gACGggaGGAGAUggagugCUGGGAGGAGCGg -3'
miRNA:   3'- aUGCaa-CUUCUGug----GACCUUCCUCGC- -5'
14367 3' -52 NC_003521.1 + 174211 0.67 0.992392
Target:  5'- cACGUUGggGuCGCgCgggucgGGcAGGGGCGc -3'
miRNA:   3'- aUGCAACuuCuGUG-Ga-----CCuUCCUCGC- -5'
14367 3' -52 NC_003521.1 + 177969 0.66 0.994252
Target:  5'- gAUGUcUGAGGcggggcACACCUGGGGcGGuGCGg -3'
miRNA:   3'- aUGCA-ACUUC------UGUGGACCUU-CCuCGC- -5'
14367 3' -52 NC_003521.1 + 180902 0.67 0.991181
Target:  5'- cACGUcGGAGACcaggaagGCUUuGAGGGAGCGu -3'
miRNA:   3'- aUGCAaCUUCUG-------UGGAcCUUCCUCGC- -5'
14367 3' -52 NC_003521.1 + 186912 0.73 0.84036
Target:  5'- gACGUccaagGggGGCGCCggUGGcGGGGGCGg -3'
miRNA:   3'- aUGCAa----CuuCUGUGG--ACCuUCCUCGC- -5'
14367 3' -52 NC_003521.1 + 188116 0.72 0.899178
Target:  5'- gACG--GAGGACACaCUGGu-GGAGCGg -3'
miRNA:   3'- aUGCaaCUUCUGUG-GACCuuCCUCGC- -5'
14367 3' -52 NC_003521.1 + 190498 0.66 0.995033
Target:  5'- aACGggccGAGGACccgcugccucCCUGGcuGAGGAGCGa -3'
miRNA:   3'- aUGCaa--CUUCUGu---------GGACC--UUCCUCGC- -5'
14367 3' -52 NC_003521.1 + 193504 0.84 0.326094
Target:  5'- gACGUUGGAGACACCUGGAaagAGGA-CGu -3'
miRNA:   3'- aUGCAACUUCUGUGGACCU---UCCUcGC- -5'
14367 3' -52 NC_003521.1 + 200725 0.7 0.93858
Target:  5'- gUGCGUcGA----GCCUGGGAGGAGCu -3'
miRNA:   3'- -AUGCAaCUucugUGGACCUUCCUCGc -5'
14367 3' -52 NC_003521.1 + 212843 0.78 0.629282
Target:  5'- gGgGUUGAAGAU-CCUGGggGGcAGCGg -3'
miRNA:   3'- aUgCAACUUCUGuGGACCuuCC-UCGC- -5'
14367 3' -52 NC_003521.1 + 228449 0.68 0.979785
Target:  5'- gGCGUgaAAGAgGCC-GGAGGGuAGCGa -3'
miRNA:   3'- aUGCAacUUCUgUGGaCCUUCC-UCGC- -5'
14367 3' -52 NC_003521.1 + 235842 0.73 0.848447
Target:  5'- cGCGggauggUGAGGACACCacacggGGAGGGAGgCa -3'
miRNA:   3'- aUGCa-----ACUUCUGUGGa-----CCUUCCUC-Gc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.