Results 21 - 39 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14367 | 3' | -52 | NC_003521.1 | + | 80442 | 0.68 | 0.986297 |
Target: 5'- gAUGgUGAAGGCGCCgaagggguucuugaGGAAGGcGGCGa -3' miRNA: 3'- aUGCaACUUCUGUGGa-------------CCUUCC-UCGC- -5' |
|||||||
14367 | 3' | -52 | NC_003521.1 | + | 71643 | 0.68 | 0.983845 |
Target: 5'- gAUGUUGAAGACcgagGCCgaguuGGAGCGg -3' miRNA: 3'- aUGCAACUUCUG----UGGaccuuCCUCGC- -5' |
|||||||
14367 | 3' | -52 | NC_003521.1 | + | 228449 | 0.68 | 0.979785 |
Target: 5'- gGCGUgaAAGAgGCC-GGAGGGuAGCGa -3' miRNA: 3'- aUGCAacUUCUgUGGaCCUUCC-UCGC- -5' |
|||||||
14367 | 3' | -52 | NC_003521.1 | + | 18477 | 0.7 | 0.959575 |
Target: 5'- cGCGgcGAGuGuCGCCUGGA-GGAGCu -3' miRNA: 3'- aUGCaaCUU-CuGUGGACCUuCCUCGc -5' |
|||||||
14367 | 3' | -52 | NC_003521.1 | + | 90533 | 0.7 | 0.959212 |
Target: 5'- gUACGcccacuaacaaauUUGcauACACCUGGGAGGAGUGg -3' miRNA: 3'- -AUGC-------------AACuucUGUGGACCUUCCUCGC- -5' |
|||||||
14367 | 3' | -52 | NC_003521.1 | + | 61813 | 0.7 | 0.958478 |
Target: 5'- gACGUUGcgugauuucuucgaGGGGC-CCUGGGAGG-GCGc -3' miRNA: 3'- aUGCAAC--------------UUCUGuGGACCUUCCuCGC- -5' |
|||||||
14367 | 3' | -52 | NC_003521.1 | + | 173368 | 0.7 | 0.955839 |
Target: 5'- gACGggaGGAGAUggagugCUGGGAGGAGCGg -3' miRNA: 3'- aUGCaa-CUUCUGug----GACCUUCCUCGC- -5' |
|||||||
14367 | 3' | -52 | NC_003521.1 | + | 140463 | 0.7 | 0.947679 |
Target: 5'- gACGaUGAacuGGACGCCaUGGAcgaagAGGAGCu -3' miRNA: 3'- aUGCaACU---UCUGUGG-ACCU-----UCCUCGc -5' |
|||||||
14367 | 3' | -52 | NC_003521.1 | + | 200725 | 0.7 | 0.93858 |
Target: 5'- gUGCGUcGA----GCCUGGGAGGAGCu -3' miRNA: 3'- -AUGCAaCUucugUGGACCUUCCUCGc -5' |
|||||||
14367 | 3' | -52 | NC_003521.1 | + | 112057 | 0.7 | 0.93858 |
Target: 5'- gACGccugcugGAGGACGCCgcgguggGGAucAGGGGCGg -3' miRNA: 3'- aUGCaa-----CUUCUGUGGa------CCU--UCCUCGC- -5' |
|||||||
14367 | 3' | -52 | NC_003521.1 | + | 188116 | 0.72 | 0.899178 |
Target: 5'- gACG--GAGGACACaCUGGu-GGAGCGg -3' miRNA: 3'- aUGCaaCUUCUGUG-GACCuuCCUCGC- -5' |
|||||||
14367 | 3' | -52 | NC_003521.1 | + | 59646 | 0.72 | 0.878037 |
Target: 5'- gGCGUUGGugcggcagacgcuGGcGCGCCUGGA-GGAGCu -3' miRNA: 3'- aUGCAACU-------------UC-UGUGGACCUuCCUCGc -5' |
|||||||
14367 | 3' | -52 | NC_003521.1 | + | 125700 | 0.73 | 0.871495 |
Target: 5'- gACGUagUGGAGACGCCggcGGucacgacGGGGGCGg -3' miRNA: 3'- aUGCA--ACUUCUGUGGa--CCu------UCCUCGC- -5' |
|||||||
14367 | 3' | -52 | NC_003521.1 | + | 72410 | 0.73 | 0.848447 |
Target: 5'- aGCGgcGGAGGCACUgaGGAAGaGGGCGa -3' miRNA: 3'- aUGCaaCUUCUGUGGa-CCUUC-CUCGC- -5' |
|||||||
14367 | 3' | -52 | NC_003521.1 | + | 235842 | 0.73 | 0.848447 |
Target: 5'- cGCGggauggUGAGGACACCacacggGGAGGGAGgCa -3' miRNA: 3'- aUGCa-----ACUUCUGUGGa-----CCUUCCUC-Gc -5' |
|||||||
14367 | 3' | -52 | NC_003521.1 | + | 186912 | 0.73 | 0.84036 |
Target: 5'- gACGUccaagGggGGCGCCggUGGcGGGGGCGg -3' miRNA: 3'- aUGCAa----CuuCUGUGG--ACCuUCCUCGC- -5' |
|||||||
14367 | 3' | -52 | NC_003521.1 | + | 212843 | 0.78 | 0.629282 |
Target: 5'- gGgGUUGAAGAU-CCUGGggGGcAGCGg -3' miRNA: 3'- aUgCAACUUCUGuGGACCuuCC-UCGC- -5' |
|||||||
14367 | 3' | -52 | NC_003521.1 | + | 193504 | 0.84 | 0.326094 |
Target: 5'- gACGUUGGAGACACCUGGAaagAGGA-CGu -3' miRNA: 3'- aUGCAACUUCUGUGGACCU---UCCUcGC- -5' |
|||||||
14367 | 3' | -52 | NC_003521.1 | + | 47279 | 1.07 | 0.013338 |
Target: 5'- gUACGUUGAAGACACCUGGAAGGAGCGu -3' miRNA: 3'- -AUGCAACUUCUGUGGACCUUCCUCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home