miRNA display CGI


Results 21 - 40 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14371 5' -62 NC_003521.1 + 123887 0.66 0.78148
Target:  5'- uCCUCgGaaGCUGUCGCGUGcUGUCGGc -3'
miRNA:   3'- -GGAGgCggUGGCGGCGCGCuGCAGCU- -5'
14371 5' -62 NC_003521.1 + 63350 0.66 0.789883
Target:  5'- cCCaCCuCCACgGCCGCGCaGACcGUCa- -3'
miRNA:   3'- -GGaGGcGGUGgCGGCGCG-CUG-CAGcu -5'
14371 5' -62 NC_003521.1 + 29738 0.66 0.806324
Target:  5'- cCCUCCaGuCCcCCGCCGgGCaACGgCGAc -3'
miRNA:   3'- -GGAGG-C-GGuGGCGGCgCGcUGCaGCU- -5'
14371 5' -62 NC_003521.1 + 123481 0.66 0.806324
Target:  5'- gCUCCGUguCCGUCGCcgGCGGggUGUCGu -3'
miRNA:   3'- gGAGGCGguGGCGGCG--CGCU--GCAGCu -5'
14371 5' -62 NC_003521.1 + 233171 0.66 0.78148
Target:  5'- -gUCCG-CGCCGCCGUGgCGGCcgccguuaccGUCGGu -3'
miRNA:   3'- ggAGGCgGUGGCGGCGC-GCUG----------CAGCU- -5'
14371 5' -62 NC_003521.1 + 179992 0.66 0.78148
Target:  5'- gCUCuCGCgGgCCGCCGuCGUGGCauccucGUCGAa -3'
miRNA:   3'- gGAG-GCGgU-GGCGGC-GCGCUG------CAGCU- -5'
14371 5' -62 NC_003521.1 + 170456 0.66 0.78148
Target:  5'- cCCUCgCGCCccagucaugucGCCGacuaGCGCGGCGaucgCGAa -3'
miRNA:   3'- -GGAG-GCGG-----------UGGCgg--CGCGCUGCa---GCU- -5'
14371 5' -62 NC_003521.1 + 240753 0.66 0.798166
Target:  5'- gCCggcCCGCCGCaCGCCGCcGCGGaaacCGGu -3'
miRNA:   3'- -GGa--GGCGGUG-GCGGCG-CGCUgca-GCU- -5'
14371 5' -62 NC_003521.1 + 194549 0.66 0.789883
Target:  5'- -gUCUGCCG-CGUCGgGCGccuCGUCGAa -3'
miRNA:   3'- ggAGGCGGUgGCGGCgCGCu--GCAGCU- -5'
14371 5' -62 NC_003521.1 + 94548 0.66 0.78148
Target:  5'- cCCUuuGCCGUCGUCGCGUuuuaggGACGgCGGg -3'
miRNA:   3'- -GGAggCGGUGGCGGCGCG------CUGCaGCU- -5'
14371 5' -62 NC_003521.1 + 142196 0.66 0.805514
Target:  5'- gCUaCCGCCGCCGCCGCucucgcccuccucGCcauggccuCGUCGc -3'
miRNA:   3'- gGA-GGCGGUGGCGGCG-------------CGcu------GCAGCu -5'
14371 5' -62 NC_003521.1 + 31828 0.66 0.78148
Target:  5'- gUCUCgGCCcgGgCGCCGaagGUGGCGUUGAa -3'
miRNA:   3'- -GGAGgCGG--UgGCGGCg--CGCUGCAGCU- -5'
14371 5' -62 NC_003521.1 + 123512 0.66 0.78148
Target:  5'- --gUCGCCGCUGCCGCcCGcaauccGCGUCGc -3'
miRNA:   3'- ggaGGCGGUGGCGGCGcGC------UGCAGCu -5'
14371 5' -62 NC_003521.1 + 3648 0.66 0.78148
Target:  5'- gCCaCgGCCGCCGCCGUcugccucgGCGGCcgggacccucGUCGGa -3'
miRNA:   3'- -GGaGgCGGUGGCGGCG--------CGCUG----------CAGCU- -5'
14371 5' -62 NC_003521.1 + 32899 0.66 0.789883
Target:  5'- gCUgCCGCCGugcCCGCCGCccccggcguagGUGGCGcCGGa -3'
miRNA:   3'- gGA-GGCGGU---GGCGGCG-----------CGCUGCaGCU- -5'
14371 5' -62 NC_003521.1 + 69961 0.66 0.798166
Target:  5'- cCCgcgcCCGCCcCCGCggagaagccgaCGCGCGucuCGUCGu -3'
miRNA:   3'- -GGa---GGCGGuGGCG-----------GCGCGCu--GCAGCu -5'
14371 5' -62 NC_003521.1 + 85330 0.66 0.798166
Target:  5'- gCCUUgGCCcgcggcCCGCCGCaggcCGGCGUCu- -3'
miRNA:   3'- -GGAGgCGGu-----GGCGGCGc---GCUGCAGcu -5'
14371 5' -62 NC_003521.1 + 32635 0.66 0.813554
Target:  5'- gUUCCGUCAUCGCgGCGgcgcagaCGACGgCGGa -3'
miRNA:   3'- gGAGGCGGUGGCGgCGC-------GCUGCaGCU- -5'
14371 5' -62 NC_003521.1 + 120440 0.66 0.78148
Target:  5'- aCCgaugCuCGCguCCGCCGCaaauaauacaGCGACGUCc- -3'
miRNA:   3'- -GGa---G-GCGguGGCGGCG----------CGCUGCAGcu -5'
14371 5' -62 NC_003521.1 + 79598 0.66 0.784855
Target:  5'- gCCgCUGCCGCCGCCaucgaacuugccgggGCGaccgcggcgccuCGGCGUCGu -3'
miRNA:   3'- -GGaGGCGGUGGCGG---------------CGC------------GCUGCAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.