miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14371 5' -62 NC_003521.1 + 79598 0.66 0.784855
Target:  5'- gCCgCUGCCGCCGCCaucgaacuugccgggGCGaccgcggcgccuCGGCGUCGu -3'
miRNA:   3'- -GGaGGCGGUGGCGG---------------CGC------------GCUGCAGCu -5'
14371 5' -62 NC_003521.1 + 206348 0.66 0.822238
Target:  5'- gCUUCCGCgaGCUGCUGgccUGCGGCGaCGAc -3'
miRNA:   3'- -GGAGGCGg-UGGCGGC---GCGCUGCaGCU- -5'
14371 5' -62 NC_003521.1 + 63350 0.66 0.789883
Target:  5'- cCCaCCuCCACgGCCGCGCaGACcGUCa- -3'
miRNA:   3'- -GGaGGcGGUGgCGGCGCG-CUG-CAGcu -5'
14371 5' -62 NC_003521.1 + 196021 0.66 0.78148
Target:  5'- cCCUCCgGCCAuCCGCUcaGCGUu-UGUCGGc -3'
miRNA:   3'- -GGAGG-CGGU-GGCGG--CGCGcuGCAGCU- -5'
14371 5' -62 NC_003521.1 + 32899 0.66 0.789883
Target:  5'- gCUgCCGCCGugcCCGCCGCccccggcguagGUGGCGcCGGa -3'
miRNA:   3'- gGA-GGCGGU---GGCGGCG-----------CGCUGCaGCU- -5'
14371 5' -62 NC_003521.1 + 234344 0.66 0.789883
Target:  5'- gCCUCCGCUGCCGgaccugccucCCGUGC--CGUCa- -3'
miRNA:   3'- -GGAGGCGGUGGC----------GGCGCGcuGCAGcu -5'
14371 5' -62 NC_003521.1 + 94548 0.66 0.78148
Target:  5'- cCCUuuGCCGUCGUCGCGUuuuaggGACGgCGGg -3'
miRNA:   3'- -GGAggCGGUGGCGGCGCG------CUGCaGCU- -5'
14371 5' -62 NC_003521.1 + 194549 0.66 0.789883
Target:  5'- -gUCUGCCG-CGUCGgGCGccuCGUCGAa -3'
miRNA:   3'- ggAGGCGGUgGCGGCgCGCu--GCAGCU- -5'
14371 5' -62 NC_003521.1 + 127021 0.66 0.78148
Target:  5'- cCCgacgaCGCCGCCGCgGUGCc-CGUCGc -3'
miRNA:   3'- -GGag---GCGGUGGCGgCGCGcuGCAGCu -5'
14371 5' -62 NC_003521.1 + 126953 0.66 0.78148
Target:  5'- gCUgUGCCGCCGCgGaaccCGCGcCGUCGu -3'
miRNA:   3'- gGAgGCGGUGGCGgC----GCGCuGCAGCu -5'
14371 5' -62 NC_003521.1 + 3648 0.66 0.78148
Target:  5'- gCCaCgGCCGCCGCCGUcugccucgGCGGCcgggacccucGUCGGa -3'
miRNA:   3'- -GGaGgCGGUGGCGGCG--------CGCUG----------CAGCU- -5'
14371 5' -62 NC_003521.1 + 233171 0.66 0.78148
Target:  5'- -gUCCG-CGCCGCCGUGgCGGCcgccguuaccGUCGGu -3'
miRNA:   3'- ggAGGCgGUGGCGGCGC-GCUG----------CAGCU- -5'
14371 5' -62 NC_003521.1 + 103783 0.66 0.789883
Target:  5'- aCUCgCGCacuCGCCGCCGUGCucCGgCGAg -3'
miRNA:   3'- gGAG-GCG---GUGGCGGCGCGcuGCaGCU- -5'
14371 5' -62 NC_003521.1 + 117978 0.66 0.789883
Target:  5'- aCCagCGCUACgacgaGCUGCGCGACGcCa- -3'
miRNA:   3'- -GGagGCGGUGg----CGGCGCGCUGCaGcu -5'
14371 5' -62 NC_003521.1 + 31828 0.66 0.78148
Target:  5'- gUCUCgGCCcgGgCGCCGaagGUGGCGUUGAa -3'
miRNA:   3'- -GGAGgCGG--UgGCGGCg--CGCUGCAGCU- -5'
14371 5' -62 NC_003521.1 + 123512 0.66 0.78148
Target:  5'- --gUCGCCGCUGCCGCcCGcaauccGCGUCGc -3'
miRNA:   3'- ggaGGCGGUGGCGGCGcGC------UGCAGCu -5'
14371 5' -62 NC_003521.1 + 123887 0.66 0.78148
Target:  5'- uCCUCgGaaGCUGUCGCGUGcUGUCGGc -3'
miRNA:   3'- -GGAGgCggUGGCGGCGCGCuGCAGCU- -5'
14371 5' -62 NC_003521.1 + 54055 0.66 0.789883
Target:  5'- aCCaCCGCCGCCuCCGC-CGAUGcCGc -3'
miRNA:   3'- -GGaGGCGGUGGcGGCGcGCUGCaGCu -5'
14371 5' -62 NC_003521.1 + 179992 0.66 0.78148
Target:  5'- gCUCuCGCgGgCCGCCGuCGUGGCauccucGUCGAa -3'
miRNA:   3'- gGAG-GCGgU-GGCGGC-GCGCUG------CAGCU- -5'
14371 5' -62 NC_003521.1 + 170456 0.66 0.78148
Target:  5'- cCCUCgCGCCccagucaugucGCCGacuaGCGCGGCGaucgCGAa -3'
miRNA:   3'- -GGAG-GCGG-----------UGGCgg--CGCGCUGCa---GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.