miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14371 5' -62 NC_003521.1 + 204 0.66 0.798166
Target:  5'- gCCggcCCGCCGCaCGCCGCcGCGGaaacCGGu -3'
miRNA:   3'- -GGa--GGCGGUG-GCGGCG-CGCUgca-GCU- -5'
14371 5' -62 NC_003521.1 + 1068 0.72 0.481367
Target:  5'- aCCUgCGCCAgcucUCGCCGCGCGACc---- -3'
miRNA:   3'- -GGAgGCGGU----GGCGGCGCGCUGcagcu -5'
14371 5' -62 NC_003521.1 + 1306 0.69 0.636535
Target:  5'- gUUCCGCUACggCGCCG-GCGACGUgGc -3'
miRNA:   3'- gGAGGCGGUG--GCGGCgCGCUGCAgCu -5'
14371 5' -62 NC_003521.1 + 2362 0.66 0.806324
Target:  5'- gUCUCCGCCccgcccgccgagGCCGCCcuGCGCcuccugcccGACcUCGAc -3'
miRNA:   3'- -GGAGGCGG------------UGGCGG--CGCG---------CUGcAGCU- -5'
14371 5' -62 NC_003521.1 + 3648 0.66 0.78148
Target:  5'- gCCaCgGCCGCCGCCGUcugccucgGCGGCcgggacccucGUCGGa -3'
miRNA:   3'- -GGaGgCGGUGGCGGCG--------CGCUG----------CAGCU- -5'
14371 5' -62 NC_003521.1 + 4340 0.72 0.464186
Target:  5'- gCCUggCGCCACCGCCGC-CGGCGguUCGc -3'
miRNA:   3'- -GGAg-GCGGUGGCGGCGcGCUGC--AGCu -5'
14371 5' -62 NC_003521.1 + 4663 0.75 0.33288
Target:  5'- uCgUCCGCUAggucCCGCCG-GCGACGUCGc -3'
miRNA:   3'- -GgAGGCGGU----GGCGGCgCGCUGCAGCu -5'
14371 5' -62 NC_003521.1 + 7658 0.66 0.789883
Target:  5'- --gCCGCCACgGCgGCGCGGacagCGGu -3'
miRNA:   3'- ggaGGCGGUGgCGgCGCGCUgca-GCU- -5'
14371 5' -62 NC_003521.1 + 11558 0.74 0.361206
Target:  5'- gCCUCCGgCGCCGUCGUGCGcCGgacucugCGGg -3'
miRNA:   3'- -GGAGGCgGUGGCGGCGCGCuGCa------GCU- -5'
14371 5' -62 NC_003521.1 + 12115 0.69 0.627171
Target:  5'- -aUCaUGCCGCCGCCGCGCucCuUCGGg -3'
miRNA:   3'- ggAG-GCGGUGGCGGCGCGcuGcAGCU- -5'
14371 5' -62 NC_003521.1 + 14250 0.68 0.683187
Target:  5'- uCCUgCUGCCcgauCCGCgGCGCGAuCGUgaCGAc -3'
miRNA:   3'- -GGA-GGCGGu---GGCGgCGCGCU-GCA--GCU- -5'
14371 5' -62 NC_003521.1 + 17097 0.67 0.728952
Target:  5'- --cCCGCCACCGgacCCGCcgucguacccgGCGAgguCGUCGAu -3'
miRNA:   3'- ggaGGCGGUGGC---GGCG-----------CGCU---GCAGCU- -5'
14371 5' -62 NC_003521.1 + 17349 0.7 0.589803
Target:  5'- aCCUCCcggGCCGugaCGCCgGCGCGGCGgcccagacUCGAg -3'
miRNA:   3'- -GGAGG---CGGUg--GCGG-CGCGCUGC--------AGCU- -5'
14371 5' -62 NC_003521.1 + 18126 0.69 0.664586
Target:  5'- -aUCCGCaCGCCcgGCCGCacCGAgGUCGAg -3'
miRNA:   3'- ggAGGCG-GUGG--CGGCGc-GCUgCAGCU- -5'
14371 5' -62 NC_003521.1 + 18451 0.67 0.755626
Target:  5'- gCCUgUGCCGCUucgaccgcggGCUGCGCGGCGagugUCGc -3'
miRNA:   3'- -GGAgGCGGUGG----------CGGCGCGCUGC----AGCu -5'
14371 5' -62 NC_003521.1 + 18714 0.68 0.710807
Target:  5'- uCCggCUGUgGCUGCCGCugGCGGCGgCGAu -3'
miRNA:   3'- -GGa-GGCGgUGGCGGCG--CGCUGCaGCU- -5'
14371 5' -62 NC_003521.1 + 19474 0.69 0.636535
Target:  5'- cCCUCCuCUACCGCCGCaaaGCGGCa---- -3'
miRNA:   3'- -GGAGGcGGUGGCGGCG---CGCUGcagcu -5'
14371 5' -62 NC_003521.1 + 19820 0.66 0.806324
Target:  5'- gCUUCCugacgcugGCCACCuacacguucGCC-CGCGACGUgGAg -3'
miRNA:   3'- -GGAGG--------CGGUGG---------CGGcGCGCUGCAgCU- -5'
14371 5' -62 NC_003521.1 + 20704 0.67 0.737923
Target:  5'- aCCgcCCGCCAacCUGgCGCGUGACGUgaUGAu -3'
miRNA:   3'- -GGa-GGCGGU--GGCgGCGCGCUGCA--GCU- -5'
14371 5' -62 NC_003521.1 + 22108 0.68 0.683187
Target:  5'- gCUUCuCGcCCGCCGCCGC-CGcCGUCu- -3'
miRNA:   3'- -GGAG-GC-GGUGGCGGCGcGCuGCAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.