miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14371 5' -62 NC_003521.1 + 129583 0.75 0.335638
Target:  5'- gCUCCGCCG-CGCCGCGcCGGCcgcgacgcucuaauaGUCGAg -3'
miRNA:   3'- gGAGGCGGUgGCGGCGC-GCUG---------------CAGCU- -5'
14371 5' -62 NC_003521.1 + 142290 0.75 0.312727
Target:  5'- aCCcgCCGCCGCUgcagcggcccaGCCGCGCG-CGUCGu -3'
miRNA:   3'- -GGa-GGCGGUGG-----------CGGCGCGCuGCAGCu -5'
14371 5' -62 NC_003521.1 + 166805 0.75 0.319341
Target:  5'- gCCgCCGCCGCUGCUGCuGCGACGauccaggCGAc -3'
miRNA:   3'- -GGaGGCGGUGGCGGCG-CGCUGCa------GCU- -5'
14371 5' -62 NC_003521.1 + 54208 0.75 0.326058
Target:  5'- aCCaCCGCCGCCGCCGUaGCccuUGUCGAa -3'
miRNA:   3'- -GGaGGCGGUGGCGGCG-CGcu-GCAGCU- -5'
14371 5' -62 NC_003521.1 + 4663 0.75 0.33288
Target:  5'- uCgUCCGCUAggucCCGCCG-GCGACGUCGc -3'
miRNA:   3'- -GgAGGCGGU----GGCGGCgCGCUGCAGCu -5'
14371 5' -62 NC_003521.1 + 130961 0.75 0.33288
Target:  5'- gCC-CCGCCGCCGCC-CGUcACGUCGu -3'
miRNA:   3'- -GGaGGCGGUGGCGGcGCGcUGCAGCu -5'
14371 5' -62 NC_003521.1 + 143185 0.75 0.33288
Target:  5'- --cCCGgCGCCGCCGCGa-ACGUCGAg -3'
miRNA:   3'- ggaGGCgGUGGCGGCGCgcUGCAGCU- -5'
14371 5' -62 NC_003521.1 + 156072 0.75 0.33288
Target:  5'- --gUCGCCGCCGCCGCGCccgagcaaGACGaCGAc -3'
miRNA:   3'- ggaGGCGGUGGCGGCGCG--------CUGCaGCU- -5'
14371 5' -62 NC_003521.1 + 105209 0.75 0.33288
Target:  5'- -aUCCGcCCGCgaGCUGCGCGGCGUCa- -3'
miRNA:   3'- ggAGGC-GGUGg-CGGCGCGCUGCAGcu -5'
14371 5' -62 NC_003521.1 + 73650 0.75 0.312727
Target:  5'- gCCUCCGCCGCgGCCGCcuccaaGACGccCGAg -3'
miRNA:   3'- -GGAGGCGGUGgCGGCGcg----CUGCa-GCU- -5'
14371 5' -62 NC_003521.1 + 58400 0.76 0.293514
Target:  5'- -aUCUGCCGCgGCCGCGUGAUG-CGGc -3'
miRNA:   3'- ggAGGCGGUGgCGGCGCGCUGCaGCU- -5'
14371 5' -62 NC_003521.1 + 124150 0.76 0.287317
Target:  5'- gCCUCCGCCGCCgcuGCCGUGCaGGCGa--- -3'
miRNA:   3'- -GGAGGCGGUGG---CGGCGCG-CUGCagcu -5'
14371 5' -62 NC_003521.1 + 135924 0.81 0.136036
Target:  5'- gCCUCgGCCACgGCCGCGgGAUGUgCGAc -3'
miRNA:   3'- -GGAGgCGGUGgCGGCGCgCUGCA-GCU- -5'
14371 5' -62 NC_003521.1 + 116371 0.8 0.171892
Target:  5'- gCCgagCUGCUGCUGCCGCGCGACGUgGu -3'
miRNA:   3'- -GGa--GGCGGUGGCGGCGCGCUGCAgCu -5'
14371 5' -62 NC_003521.1 + 69174 0.78 0.211146
Target:  5'- cCCgacgcCCGCCGCgGCCGCGCuagacauacccGACGUCGGc -3'
miRNA:   3'- -GGa----GGCGGUGgCGGCGCG-----------CUGCAGCU- -5'
14371 5' -62 NC_003521.1 + 153935 0.77 0.241423
Target:  5'- uCCUCgGCCAcCCGCCGCGCcgucauGGUGUCGAa -3'
miRNA:   3'- -GGAGgCGGU-GGCGGCGCG------CUGCAGCU- -5'
14371 5' -62 NC_003521.1 + 187476 0.77 0.241423
Target:  5'- cCCUCCGCCGCCGCgccgGCGUgGugGUCa- -3'
miRNA:   3'- -GGAGGCGGUGGCGg---CGCG-CugCAGcu -5'
14371 5' -62 NC_003521.1 + 111610 0.77 0.241423
Target:  5'- uCCUCuCGCC-CCGCgGCGaCGAgGUCGAa -3'
miRNA:   3'- -GGAG-GCGGuGGCGgCGC-GCUgCAGCU- -5'
14371 5' -62 NC_003521.1 + 57368 0.77 0.246807
Target:  5'- --aCCGCCGCCGUgaCGCGCcagGGCGUCGAu -3'
miRNA:   3'- ggaGGCGGUGGCG--GCGCG---CUGCAGCU- -5'
14371 5' -62 NC_003521.1 + 100644 0.77 0.257875
Target:  5'- aCCggCCGUC-CCGCCGCGUuGCGUCGGc -3'
miRNA:   3'- -GGa-GGCGGuGGCGGCGCGcUGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.