Results 1 - 20 of 338 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14371 | 5' | -62 | NC_003521.1 | + | 54172 | 1.09 | 0.001787 |
Target: 5'- gCCUCCGCCACCGCCGCGCGACGUCGAc -3' miRNA: 3'- -GGAGGCGGUGGCGGCGCGCUGCAGCU- -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 190384 | 0.82 | 0.126697 |
Target: 5'- gCUCCGuCCACCGCUGaggaGCGAUGUCGGc -3' miRNA: 3'- gGAGGC-GGUGGCGGCg---CGCUGCAGCU- -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 135924 | 0.81 | 0.136036 |
Target: 5'- gCCUCgGCCACgGCCGCGgGAUGUgCGAc -3' miRNA: 3'- -GGAGgCGGUGgCGGCGCgCUGCA-GCU- -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 194561 | 0.8 | 0.156633 |
Target: 5'- aCCUCugCGCUACCGCCaccgaGgGCGACGUCGAg -3' miRNA: 3'- -GGAG--GCGGUGGCGG-----CgCGCUGCAGCU- -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 116371 | 0.8 | 0.171892 |
Target: 5'- gCCgagCUGCUGCUGCCGCGCGACGUgGu -3' miRNA: 3'- -GGa--GGCGGUGGCGGCGCGCUGCAgCu -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 101029 | 0.78 | 0.208305 |
Target: 5'- gCUUCGCCACCGCCGaggGCGACGccaaacccauccgacUCGAg -3' miRNA: 3'- gGAGGCGGUGGCGGCg--CGCUGC---------------AGCU- -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 69174 | 0.78 | 0.211146 |
Target: 5'- cCCgacgcCCGCCGCgGCCGCGCuagacauacccGACGUCGGc -3' miRNA: 3'- -GGa----GGCGGUGgCGGCGCG-----------CUGCAGCU- -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 187476 | 0.77 | 0.241423 |
Target: 5'- cCCUCCGCCGCCGCgccgGCGUgGugGUCa- -3' miRNA: 3'- -GGAGGCGGUGGCGg---CGCG-CugCAGcu -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 153935 | 0.77 | 0.241423 |
Target: 5'- uCCUCgGCCAcCCGCCGCGCcgucauGGUGUCGAa -3' miRNA: 3'- -GGAGgCGGU-GGCGGCGCG------CUGCAGCU- -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 111610 | 0.77 | 0.241423 |
Target: 5'- uCCUCuCGCC-CCGCgGCGaCGAgGUCGAa -3' miRNA: 3'- -GGAG-GCGGuGGCGgCGC-GCUgCAGCU- -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 57368 | 0.77 | 0.246807 |
Target: 5'- --aCCGCCGCCGUgaCGCGCcagGGCGUCGAu -3' miRNA: 3'- ggaGGCGGUGGCG--GCGCG---CUGCAGCU- -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 148809 | 0.77 | 0.252292 |
Target: 5'- aCCgCCGCCGCCGCCGCGCcuCGcCGc -3' miRNA: 3'- -GGaGGCGGUGGCGGCGCGcuGCaGCu -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 100644 | 0.77 | 0.257875 |
Target: 5'- aCCggCCGUC-CCGCCGCGUuGCGUCGGc -3' miRNA: 3'- -GGa-GGCGGuGGCGGCGCGcUGCAGCU- -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 124150 | 0.76 | 0.287317 |
Target: 5'- gCCUCCGCCGCCgcuGCCGUGCaGGCGa--- -3' miRNA: 3'- -GGAGGCGGUGG---CGGCGCG-CUGCagcu -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 92202 | 0.76 | 0.293514 |
Target: 5'- uUUUCGCCGCCcgGCCGCGCGACGagCGc -3' miRNA: 3'- gGAGGCGGUGG--CGGCGCGCUGCa-GCu -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 58400 | 0.76 | 0.293514 |
Target: 5'- -aUCUGCCGCgGCCGCGUGAUG-CGGc -3' miRNA: 3'- ggAGGCGGUGgCGGCGCGCUGCaGCU- -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 142290 | 0.75 | 0.312727 |
Target: 5'- aCCcgCCGCCGCUgcagcggcccaGCCGCGCG-CGUCGu -3' miRNA: 3'- -GGa-GGCGGUGG-----------CGGCGCGCuGCAGCu -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 73650 | 0.75 | 0.312727 |
Target: 5'- gCCUCCGCCGCgGCCGCcuccaaGACGccCGAg -3' miRNA: 3'- -GGAGGCGGUGgCGGCGcg----CUGCa-GCU- -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 166805 | 0.75 | 0.319341 |
Target: 5'- gCCgCCGCCGCUGCUGCuGCGACGauccaggCGAc -3' miRNA: 3'- -GGaGGCGGUGGCGGCG-CGCUGCa------GCU- -5' |
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14371 | 5' | -62 | NC_003521.1 | + | 72284 | 0.75 | 0.322015 |
Target: 5'- gCCagCGCCGCCGCCGCGCuGgccgccagccugcugGCGUCGc -3' miRNA: 3'- -GGagGCGGUGGCGGCGCG-C---------------UGCAGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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