miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1438 5' -57 NC_001335.1 + 37686 0.66 0.5741
Target:  5'- uGCAGCCGggacGGGUGuACACCGUgACCgGc -3'
miRNA:   3'- cUGUCGGC----UCCAU-UGUGGCG-UGGgUa -5'
1438 5' -57 NC_001335.1 + 2238 0.66 0.559908
Target:  5'- cGACAGCCG-GGUcaguacGugGCCGUucucugcgacgaacGCCCGa -3'
miRNA:   3'- -CUGUCGGCuCCA------UugUGGCG--------------UGGGUa -5'
1438 5' -57 NC_001335.1 + 50756 0.66 0.541502
Target:  5'- -uCGGCCGGGG--GCGgCGCACCUu- -3'
miRNA:   3'- cuGUCGGCUCCauUGUgGCGUGGGua -5'
1438 5' -57 NC_001335.1 + 7358 0.67 0.530768
Target:  5'- uGACcaaGGUCGAGGgcuC-CCGCACCCu- -3'
miRNA:   3'- -CUG---UCGGCUCCauuGuGGCGUGGGua -5'
1438 5' -57 NC_001335.1 + 26874 0.67 0.520114
Target:  5'- -cCAGCuCGAugucuGGUugAGCACCGuCACCCAg -3'
miRNA:   3'- cuGUCG-GCU-----CCA--UUGUGGC-GUGGGUa -5'
1438 5' -57 NC_001335.1 + 17227 0.67 0.499065
Target:  5'- cGACcuGGCCGAGGgccguCGCCaGCGCCgGg -3'
miRNA:   3'- -CUG--UCGGCUCCauu--GUGG-CGUGGgUa -5'
1438 5' -57 NC_001335.1 + 8373 0.68 0.435484
Target:  5'- aGCGGCCGGguGGUGaugguucgaugacaGCACCGCucCCCGg -3'
miRNA:   3'- cUGUCGGCU--CCAU--------------UGUGGCGu-GGGUa -5'
1438 5' -57 NC_001335.1 + 37318 0.69 0.400393
Target:  5'- uGACGGCCacguccuccGGGGUgaacucGACGCCGCGCUUGUa -3'
miRNA:   3'- -CUGUCGG---------CUCCA------UUGUGGCGUGGGUA- -5'
1438 5' -57 NC_001335.1 + 32842 0.69 0.391223
Target:  5'- aGCAGCCGAGGccgucguCACCGuCGCCgAc -3'
miRNA:   3'- cUGUCGGCUCCauu----GUGGC-GUGGgUa -5'
1438 5' -57 NC_001335.1 + 22672 0.7 0.355941
Target:  5'- aGCGGCCGAgGGUAcUACCGUGCCgAc -3'
miRNA:   3'- cUGUCGGCU-CCAUuGUGGCGUGGgUa -5'
1438 5' -57 NC_001335.1 + 12920 0.7 0.322958
Target:  5'- cGugAGCgCGAGcGaccGACACCGCGCCCc- -3'
miRNA:   3'- -CugUCG-GCUC-Ca--UUGUGGCGUGGGua -5'
1438 5' -57 NC_001335.1 + 6049 0.72 0.257257
Target:  5'- cGACGGCCacaucGGG-AACGCCGCugCCGg -3'
miRNA:   3'- -CUGUCGGc----UCCaUUGUGGCGugGGUa -5'
1438 5' -57 NC_001335.1 + 33850 0.72 0.244229
Target:  5'- uGAUguGGCCGAGGUuGCACgGCuCCCAc -3'
miRNA:   3'- -CUG--UCGGCUCCAuUGUGgCGuGGGUa -5'
1438 5' -57 NC_001335.1 + 27670 0.72 0.244229
Target:  5'- uACAGCCGcagcAGGUGcaGCAgCCGCACUCGUa -3'
miRNA:   3'- cUGUCGGC----UCCAU--UGU-GGCGUGGGUA- -5'
1438 5' -57 NC_001335.1 + 21548 0.73 0.231753
Target:  5'- cGAUAGCCGAGGUcguggaguGACcCCGUucaACCCAg -3'
miRNA:   3'- -CUGUCGGCUCCA--------UUGuGGCG---UGGGUa -5'
1438 5' -57 NC_001335.1 + 4132 1.05 0.001001
Target:  5'- cGACAGCCGAGGUAACACCGCACCCAUc -3'
miRNA:   3'- -CUGUCGGCUCCAUUGUGGCGUGGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.