miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 212155 0.66 0.739188
Target:  5'- aGGGcCGUguccauguGCCGCGCC-UUGCCCagggCCu -3'
miRNA:   3'- gCCCaGCG--------UGGUGCGGcGACGGGa---GG- -5'
14387 3' -62.8 NC_003521.1 + 75548 0.66 0.730167
Target:  5'- aGcGG-CGCcggcggcgGCUACGCCaGC-GCCCUCCu -3'
miRNA:   3'- gC-CCaGCG--------UGGUGCGG-CGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 223973 0.66 0.739188
Target:  5'- aGcGGUCguugucagGCACCACGUgaUUGUCCUCCu -3'
miRNA:   3'- gC-CCAG--------CGUGGUGCGgcGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 111867 0.66 0.730167
Target:  5'- -----aGCGCCACGCCGCcagcCCCUCg -3'
miRNA:   3'- gcccagCGUGGUGCGGCGac--GGGAGg -5'
14387 3' -62.8 NC_003521.1 + 154014 0.66 0.733785
Target:  5'- aCGGGUCGCGCagCACcuggugcaugcucuuGCCGCggcaggcGCCCauaaagCCg -3'
miRNA:   3'- -GCCCAGCGUG--GUG---------------CGGCGa------CGGGa-----GG- -5'
14387 3' -62.8 NC_003521.1 + 133479 0.66 0.74813
Target:  5'- cCGaGGUCGaggauCACCugGCGCCGCUGCUgCggggCCc -3'
miRNA:   3'- -GC-CCAGC-----GUGG--UGCGGCGACGG-Ga---GG- -5'
14387 3' -62.8 NC_003521.1 + 150562 0.66 0.764876
Target:  5'- gCGGGUgGUggcggcgGCgGCGgCGCgGCuCCUCCu -3'
miRNA:   3'- -GCCCAgCG-------UGgUGCgGCGaCG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 22273 0.66 0.74724
Target:  5'- gGGGUC-UACCACgGCCucgccugGCaGCUCUCCu -3'
miRNA:   3'- gCCCAGcGUGGUG-CGG-------CGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 153438 0.66 0.74813
Target:  5'- -cGG-CGuCACCucCGCCGCcucGUCCUCCa -3'
miRNA:   3'- gcCCaGC-GUGGu-GCGGCGa--CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 59708 0.66 0.769224
Target:  5'- uCGGGUCGCcUgguggcgcaauucgaCACGCCGgauCUGgCCUUCg -3'
miRNA:   3'- -GCCCAGCGuG---------------GUGCGGC---GACgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 223755 0.66 0.74724
Target:  5'- uGGGUCGcCGCCagcgguaucgucgGCGCUGCUGgUgCUgCCg -3'
miRNA:   3'- gCCCAGC-GUGG-------------UGCGGCGAC-GgGA-GG- -5'
14387 3' -62.8 NC_003521.1 + 208693 0.66 0.739188
Target:  5'- -uGGU-GCACCGCGCCcgcuacCUGCCCgagaucagCCg -3'
miRNA:   3'- gcCCAgCGUGGUGCGGc-----GACGGGa-------GG- -5'
14387 3' -62.8 NC_003521.1 + 2354 0.66 0.742775
Target:  5'- uGGGcCGCgucuccgccccgcccGCCGagGCCGCccUGCgCCUCCu -3'
miRNA:   3'- gCCCaGCG---------------UGGUg-CGGCG--ACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 130450 0.66 0.744563
Target:  5'- aCGGGcgacgaucgacgaCGCGCCAgCGCUcCUGCUCUUCg -3'
miRNA:   3'- -GCCCa------------GCGUGGU-GCGGcGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 132368 0.66 0.756986
Target:  5'- aGGGUaucaGCGgCACGCCGCacaCCCgcgaggucaUCCg -3'
miRNA:   3'- gCCCAg---CGUgGUGCGGCGac-GGG---------AGG- -5'
14387 3' -62.8 NC_003521.1 + 168076 0.66 0.765748
Target:  5'- gGaGGUagagcgcgGCACCACcgGUCGgaUGCCCUCCa -3'
miRNA:   3'- gC-CCAg-------CGUGGUG--CGGCg-ACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 141220 0.66 0.721074
Target:  5'- cCGGG-CGCugCaggucaccaacGCGCCGCaGUUCUUCg -3'
miRNA:   3'- -GCCCaGCGugG-----------UGCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 187623 0.66 0.721074
Target:  5'- cCGGGcgagcCGgGCCgcGCGCCGCUGgCCaUCUu -3'
miRNA:   3'- -GCCCa----GCgUGG--UGCGGCGACgGG-AGG- -5'
14387 3' -62.8 NC_003521.1 + 163103 0.66 0.765748
Target:  5'- uCGGGcgccaGCGCCACGaccaCCGCcG-CCUCCu -3'
miRNA:   3'- -GCCCag---CGUGGUGC----GGCGaCgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 105823 0.66 0.74813
Target:  5'- aGGG-CGaCGCCACGgC-CUGCCC-CUg -3'
miRNA:   3'- gCCCaGC-GUGGUGCgGcGACGGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.