miRNA display CGI


Results 21 - 40 of 274 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 53975 0.66 0.74813
Target:  5'- cCGuGGUCGUgAUCGCGCucgaCGUUGCCCaUCUu -3'
miRNA:   3'- -GC-CCAGCG-UGGUGCG----GCGACGGG-AGG- -5'
14387 3' -62.8 NC_003521.1 + 202582 0.66 0.73649
Target:  5'- uGGGcCGCgucucgccccgcccGCCGagGCCGCccUGCgCCUCCu -3'
miRNA:   3'- gCCCaGCG--------------UGGUg-CGGCG--ACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 128927 0.66 0.739188
Target:  5'- aGGGccuggCGCGCCAgCGUgGC-GUUCUCCa -3'
miRNA:   3'- gCCCa----GCGUGGU-GCGgCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 36016 0.66 0.765748
Target:  5'- gGaGGUgGCGgccCCACGaCCGUcuugGCCCUCUu -3'
miRNA:   3'- gC-CCAgCGU---GGUGC-GGCGa---CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 132368 0.66 0.756986
Target:  5'- aGGGUaucaGCGgCACGCCGCacaCCCgcgaggucaUCCg -3'
miRNA:   3'- gCCCAg---CGUgGUGCGGCGac-GGG---------AGG- -5'
14387 3' -62.8 NC_003521.1 + 148781 0.66 0.765748
Target:  5'- gGcGGUCGCGCCGaggaGCCGCgGCUg--- -3'
miRNA:   3'- gC-CCAGCGUGGUg---CGGCGaCGGgagg -5'
14387 3' -62.8 NC_003521.1 + 30282 0.66 0.74813
Target:  5'- gCGGGcgCGCuCCACGUCGUcgaaguaGCUCUUCa -3'
miRNA:   3'- -GCCCa-GCGuGGUGCGGCGa------CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 111867 0.66 0.730167
Target:  5'- -----aGCGCCACGCCGCcagcCCCUCg -3'
miRNA:   3'- gcccagCGUGGUGCGGCGac--GGGAGg -5'
14387 3' -62.8 NC_003521.1 + 146175 0.66 0.739188
Target:  5'- uGGGcCGCGaguugCugGCCgGCggacgGCCCUUCa -3'
miRNA:   3'- gCCCaGCGUg----GugCGG-CGa----CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 224034 0.66 0.756104
Target:  5'- uCGGGgcggGCGCCGuCGCCcCUGggacucuucgucaCCCUCCu -3'
miRNA:   3'- -GCCCag--CGUGGU-GCGGcGAC-------------GGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 68360 0.66 0.739188
Target:  5'- -cGG-CGCACCGCuGCCGgccCUGCCUcCCc -3'
miRNA:   3'- gcCCaGCGUGGUG-CGGC---GACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 150562 0.66 0.764876
Target:  5'- gCGGGUgGUggcggcgGCgGCGgCGCgGCuCCUCCu -3'
miRNA:   3'- -GCCCAgCG-------UGgUGCgGCGaCG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 200589 0.66 0.756986
Target:  5'- -cGGagGCgGCCcuGCGaCCGCUGCCCgCCu -3'
miRNA:   3'- gcCCagCG-UGG--UGC-GGCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 39421 0.66 0.756986
Target:  5'- uGGG-CGCcgagaaaAUGCCGCUGCCggCCg -3'
miRNA:   3'- gCCCaGCGugg----UGCGGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 54521 0.66 0.721074
Target:  5'- aGGaUCuGCACgGCGCCGCUgggGCCCg-- -3'
miRNA:   3'- gCCcAG-CGUGgUGCGGCGA---CGGGagg -5'
14387 3' -62.8 NC_003521.1 + 226892 0.66 0.74813
Target:  5'- gCGGGg-GCACCACggcgGCCaGCgcGgCCUCCg -3'
miRNA:   3'- -GCCCagCGUGGUG----CGG-CGa-CgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 12194 0.66 0.74813
Target:  5'- -uGGUgGuUugCGCGCCGCgggGUUCUCCu -3'
miRNA:   3'- gcCCAgC-GugGUGCGGCGa--CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 103222 0.66 0.765748
Target:  5'- uGaGGUCGCcgGCCAgGCgGCgGCCCa-- -3'
miRNA:   3'- gC-CCAGCG--UGGUgCGgCGaCGGGagg -5'
14387 3' -62.8 NC_003521.1 + 104692 0.66 0.721074
Target:  5'- gGGGcCGUggGCgGCGUCGacgUGCCCUCg -3'
miRNA:   3'- gCCCaGCG--UGgUGCGGCg--ACGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 15688 0.66 0.721074
Target:  5'- uGGGUcCGCaACCACGUCgaccagguGCUGUCgCUCg -3'
miRNA:   3'- gCCCA-GCG-UGGUGCGG--------CGACGG-GAGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.