miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 22353 0.68 0.608902
Target:  5'- cCGGGgccacugCGC-CCACGgCGUggugccggccaUGUCCUCCg -3'
miRNA:   3'- -GCCCa------GCGuGGUGCgGCG-----------ACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 23906 0.74 0.30492
Target:  5'- gGGGUCG-ACCGCcuCCGCUgccaccgcGCCCUCCu -3'
miRNA:   3'- gCCCAGCgUGGUGc-GGCGA--------CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 25162 0.68 0.618317
Target:  5'- -uGGUCGCGCUuuCGCUGCU-CCCgCCg -3'
miRNA:   3'- gcCCAGCGUGGu-GCGGCGAcGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 26911 0.7 0.498557
Target:  5'- -uGGUCGCACCGCGCuccagacacgcuCGCgacucGCCUUCUc -3'
miRNA:   3'- gcCCAGCGUGGUGCG------------GCGa----CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 28758 0.72 0.413874
Target:  5'- gCGGGcCGCGCCAcCGCCcuagcGCUGCaCUUUCu -3'
miRNA:   3'- -GCCCaGCGUGGU-GCGG-----CGACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 29010 0.67 0.693435
Target:  5'- aGGG-CGCGCuCAa---GCUGCUCUCCg -3'
miRNA:   3'- gCCCaGCGUG-GUgcggCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 29997 0.67 0.693435
Target:  5'- aGGGgacgaGCGCCACGgaCCGCUGUCggaacagaacugUUCCg -3'
miRNA:   3'- gCCCag---CGUGGUGC--GGCGACGG------------GAGG- -5'
14387 3' -62.8 NC_003521.1 + 30282 0.66 0.74813
Target:  5'- gCGGGcgCGCuCCACGUCGUcgaaguaGCUCUUCa -3'
miRNA:   3'- -GCCCa-GCGuGGUGCGGCGa------CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 31773 0.71 0.446718
Target:  5'- gGGGUCGCGCCA-GUCGCcGCaCUCg -3'
miRNA:   3'- gCCCAGCGUGGUgCGGCGaCGgGAGg -5'
14387 3' -62.8 NC_003521.1 + 32874 0.67 0.662588
Target:  5'- uCGGuuuggCGC-CCGCGCCGCcggugcugccgccgUGCCCgCCg -3'
miRNA:   3'- -GCCca---GCGuGGUGCGGCG--------------ACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 34625 0.66 0.74813
Target:  5'- gGGGUCGCAgcggaUCAUGCCcuugGCgaaaaaGCCCcCCa -3'
miRNA:   3'- gCCCAGCGU-----GGUGCGG----CGa-----CGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 35148 0.67 0.656007
Target:  5'- gCGGGU-GCGCCACGC-GCccggGCCUUUUa -3'
miRNA:   3'- -GCCCAgCGUGGUGCGgCGa---CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 35808 0.67 0.665405
Target:  5'- gGGcGUCGCGgCACGCCGUcguuagcgGgUCUCCc -3'
miRNA:   3'- gCC-CAGCGUgGUGCGGCGa-------CgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 36016 0.66 0.765748
Target:  5'- gGaGGUgGCGgccCCACGaCCGUcuugGCCCUCUu -3'
miRNA:   3'- gC-CCAgCGU---GGUGC-GGCGa---CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 39421 0.66 0.756986
Target:  5'- uGGG-CGCcgagaaaAUGCCGCUGCCggCCg -3'
miRNA:   3'- gCCCaGCGugg----UGCGGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 39524 0.66 0.72472
Target:  5'- gGGGUCGCGCgGCGagaGCUGgcgcaggucgguggcCCCgacgCCg -3'
miRNA:   3'- gCCCAGCGUGgUGCgg-CGAC---------------GGGa---GG- -5'
14387 3' -62.8 NC_003521.1 + 40487 0.68 0.627742
Target:  5'- cCGcGG-CGCGCCacgGCGCCGCaGCgcaucucgaacuCCUCCa -3'
miRNA:   3'- -GC-CCaGCGUGG---UGCGGCGaCG------------GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 43826 0.71 0.455154
Target:  5'- cCGGGUCaGcCGCCGCcgGCCGCggGCCCgUCa -3'
miRNA:   3'- -GCCCAG-C-GUGGUG--CGGCGa-CGGG-AGg -5'
14387 3' -62.8 NC_003521.1 + 43995 0.68 0.646593
Target:  5'- gGGGuUCGUgggccugcucaACCACGgC-CUGCCCUCg -3'
miRNA:   3'- gCCC-AGCG-----------UGGUGCgGcGACGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 44111 0.68 0.637169
Target:  5'- --cGUCGcCGCCGgugaagucggcCGUCGCUGCuCCUCCu -3'
miRNA:   3'- gccCAGC-GUGGU-----------GCGGCGACG-GGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.