miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 360 0.71 0.480962
Target:  5'- cCGGaGgcgGCGCCuGCGaCCGCUGCCCgCCu -3'
miRNA:   3'- -GCC-Cag-CGUGG-UGC-GGCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 1356 0.73 0.360131
Target:  5'- uGGGgcugaaCGCGCCGCGggccaCCGCUGUCC-CCg -3'
miRNA:   3'- gCCCa-----GCGUGGUGC-----GGCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 2018 0.68 0.627742
Target:  5'- aCGGcGUCGCGCCccacaacuCGuCCGCUGCUa-CCu -3'
miRNA:   3'- -GCC-CAGCGUGGu-------GC-GGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 2354 0.66 0.742775
Target:  5'- uGGGcCGCgucuccgccccgcccGCCGagGCCGCccUGCgCCUCCu -3'
miRNA:   3'- gCCCaGCG---------------UGGUg-CGGCG--ACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 7381 0.66 0.739188
Target:  5'- uGGGUaCGU--UACGCC-CUGCCCggCCa -3'
miRNA:   3'- gCCCA-GCGugGUGCGGcGACGGGa-GG- -5'
14387 3' -62.8 NC_003521.1 + 11844 0.68 0.618317
Target:  5'- -cGGUCcuGCGCCGC-CCGC-GCaCCUCCu -3'
miRNA:   3'- gcCCAG--CGUGGUGcGGCGaCG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 12194 0.66 0.74813
Target:  5'- -uGGUgGuUugCGCGCCGCgggGUUCUCCu -3'
miRNA:   3'- gcCCAgC-GugGUGCGGCGa--CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 13917 0.67 0.711916
Target:  5'- gGGGcCGCggagGCCGCgcugGCCGCcguggUGCCC-CCg -3'
miRNA:   3'- gCCCaGCG----UGGUG----CGGCG-----ACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 15688 0.66 0.721074
Target:  5'- uGGGUcCGCaACCACGUCgaccagguGCUGUCgCUCg -3'
miRNA:   3'- gCCCA-GCG-UGGUGCGG--------CGACGG-GAGg -5'
14387 3' -62.8 NC_003521.1 + 16386 0.67 0.684126
Target:  5'- ----aCGCACCugGaCCGCUcGCCCaCCa -3'
miRNA:   3'- gcccaGCGUGGugC-GGCGA-CGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 17448 0.68 0.637169
Target:  5'- uCGGGgCGcCGCgAUGUCGCUGCUgaCCa -3'
miRNA:   3'- -GCCCaGC-GUGgUGCGGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 18137 0.67 0.665405
Target:  5'- -cGGcCGCACCGaggucgaGCCGCUGCUCa-- -3'
miRNA:   3'- gcCCaGCGUGGUg------CGGCGACGGGagg -5'
14387 3' -62.8 NC_003521.1 + 18175 0.71 0.430112
Target:  5'- gCGuGGaggCGCugCGCGCCuGCcgGCCCUUCg -3'
miRNA:   3'- -GC-CCa--GCGugGUGCGG-CGa-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 18764 0.73 0.374981
Target:  5'- aCGGGUCGCugCugcgACgGCUGgUGCCCcCCg -3'
miRNA:   3'- -GCCCAGCGugG----UG-CGGCgACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 18921 0.7 0.516433
Target:  5'- aGGGUgGCGCCGCGC-GCcgGCaaUCCg -3'
miRNA:   3'- gCCCAgCGUGGUGCGgCGa-CGggAGG- -5'
14387 3' -62.8 NC_003521.1 + 18980 0.67 0.710997
Target:  5'- gGGGUcgaggaCGCGCCGCGCgacgagggagacaCGCccGCCCcgCCg -3'
miRNA:   3'- gCCCA------GCGUGGUGCG-------------GCGa-CGGGa-GG- -5'
14387 3' -62.8 NC_003521.1 + 19451 0.68 0.627742
Target:  5'- gGGGgaggCGCggcgggACCAUGUCGCUGCgCggCCa -3'
miRNA:   3'- gCCCa---GCG------UGGUGCGGCGACGgGa-GG- -5'
14387 3' -62.8 NC_003521.1 + 20320 0.78 0.166471
Target:  5'- -aGGagGcCACCACGCUGCUGCUCUCCc -3'
miRNA:   3'- gcCCagC-GUGGUGCGGCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 22089 0.67 0.656007
Target:  5'- gGGGgacCGUcCCgACGCCGCUucucGCCCgCCg -3'
miRNA:   3'- gCCCa--GCGuGG-UGCGGCGA----CGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 22273 0.66 0.74724
Target:  5'- gGGGUC-UACCACgGCCucgccugGCaGCUCUCCu -3'
miRNA:   3'- gCCCAGcGUGGUG-CGG-------CGaCGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.