miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 239751 0.66 0.72472
Target:  5'- gGGGUCGCGCgGCGagaGCUGgcgcaggucgguggcCCCgacgCCg -3'
miRNA:   3'- gCCCAGCGUGgUGCgg-CGAC---------------GGGa---GG- -5'
14387 3' -62.8 NC_003521.1 + 238012 0.71 0.43837
Target:  5'- uGGGUCGCcagucuucgucAUCGCGUCGUaggGCCCgUCCu -3'
miRNA:   3'- gCCCAGCG-----------UGGUGCGGCGa--CGGG-AGG- -5'
14387 3' -62.8 NC_003521.1 + 237632 0.7 0.53365
Target:  5'- uCGGGUUGCuguugcccuugucGCCACGCaGCgUGCCaUCCu -3'
miRNA:   3'- -GCCCAGCG-------------UGGUGCGgCG-ACGGgAGG- -5'
14387 3' -62.8 NC_003521.1 + 235289 0.68 0.615491
Target:  5'- gGcGGcCGCGCCGgcugccgucaccguCGCUGCUGCUaCUCCu -3'
miRNA:   3'- gC-CCaGCGUGGU--------------GCGGCGACGG-GAGG- -5'
14387 3' -62.8 NC_003521.1 + 233077 0.7 0.516433
Target:  5'- uGGGacugcCGcCGCCucCGCCGCUcgcgccGCCCUCCc -3'
miRNA:   3'- gCCCa----GC-GUGGu-GCGGCGA------CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 226892 0.66 0.74813
Target:  5'- gCGGGg-GCACCACggcgGCCaGCgcGgCCUCCg -3'
miRNA:   3'- -GCCCagCGUGGUG----CGG-CGa-CgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 225060 0.67 0.711916
Target:  5'- -uGGUCGCguagcucgGgCAUGCUGCUGCCCg-- -3'
miRNA:   3'- gcCCAGCG--------UgGUGCGGCGACGGGagg -5'
14387 3' -62.8 NC_003521.1 + 224297 0.68 0.645651
Target:  5'- aGGGUCcguuGCGCUccagccgagccgaGCGCCGCaGCCCgugCUc -3'
miRNA:   3'- gCCCAG----CGUGG-------------UGCGGCGaCGGGa--GG- -5'
14387 3' -62.8 NC_003521.1 + 224034 0.66 0.756104
Target:  5'- uCGGGgcggGCGCCGuCGCCcCUGggacucuucgucaCCCUCCu -3'
miRNA:   3'- -GCCCag--CGUGGU-GCGGcGAC-------------GGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 223973 0.66 0.739188
Target:  5'- aGcGGUCguugucagGCACCACGUgaUUGUCCUCCu -3'
miRNA:   3'- gC-CCAG--------CGUGGUGCGgcGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 223812 0.67 0.655066
Target:  5'- aCGGGcCuGCGCCgccgccaccgcggGCGCCuGCUGuCCCUgCg -3'
miRNA:   3'- -GCCCaG-CGUGG-------------UGCGG-CGAC-GGGAgG- -5'
14387 3' -62.8 NC_003521.1 + 223755 0.66 0.74724
Target:  5'- uGGGUCGcCGCCagcgguaucgucgGCGCUGCUGgUgCUgCCg -3'
miRNA:   3'- gCCCAGC-GUGG-------------UGCGGCGAC-GgGA-GG- -5'
14387 3' -62.8 NC_003521.1 + 223211 0.67 0.702701
Target:  5'- gCGGGuUCGUA-UACGCCGCgacGCCUggcgcgUCCa -3'
miRNA:   3'- -GCCC-AGCGUgGUGCGGCGa--CGGG------AGG- -5'
14387 3' -62.8 NC_003521.1 + 223028 0.68 0.608902
Target:  5'- -cGGUCGCACggccagCACGCCGaC-GgCCUCCa -3'
miRNA:   3'- gcCCAGCGUG------GUGCGGC-GaCgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 222499 0.67 0.702701
Target:  5'- -uGGUCcaacaGCACCACGCCGCUgggcacgaaggGUCCauaggCCa -3'
miRNA:   3'- gcCCAG-----CGUGGUGCGGCGA-----------CGGGa----GG- -5'
14387 3' -62.8 NC_003521.1 + 222017 0.75 0.261563
Target:  5'- gCGGGaaGCACUugGCCacgcgaaagcagcGCUgGCCCUCCa -3'
miRNA:   3'- -GCCCagCGUGGugCGG-------------CGA-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 221765 0.75 0.279846
Target:  5'- aGcGUCuGCGCCGCGCCGCcGUCCUCg -3'
miRNA:   3'- gCcCAG-CGUGGUGCGGCGaCGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 221345 0.68 0.646593
Target:  5'- gCGGGccaccUGCACCugGCCGCgcagcgacaugGUCCcgCCg -3'
miRNA:   3'- -GCCCa----GCGUGGugCGGCGa----------CGGGa-GG- -5'
14387 3' -62.8 NC_003521.1 + 216634 0.66 0.765748
Target:  5'- gCGGG-CGCGCCgACGCCGggaaaGCgaagaCUCCg -3'
miRNA:   3'- -GCCCaGCGUGG-UGCGGCga---CGg----GAGG- -5'
14387 3' -62.8 NC_003521.1 + 216571 0.67 0.699926
Target:  5'- -aGGUCGcCGCCGauauaccgcccgacCGcCCGCUGCCCaacCCg -3'
miRNA:   3'- gcCCAGC-GUGGU--------------GC-GGCGACGGGa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.