miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 31773 0.71 0.446718
Target:  5'- gGGGUCGCGCCA-GUCGCcGCaCUCg -3'
miRNA:   3'- gCCCAGCGUGGUgCGGCGaCGgGAGg -5'
14387 3' -62.8 NC_003521.1 + 138055 0.73 0.378
Target:  5'- uGGGUCGC-CCGCgaccGCCGCggacagcugaggcgcUgGCCCUCCc -3'
miRNA:   3'- gCCCAGCGuGGUG----CGGCG---------------A-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 103572 0.72 0.390239
Target:  5'- -aGGUCGC-CCGCGCagaaGCUGCgcacguacuCCUCCa -3'
miRNA:   3'- gcCCAGCGuGGUGCGg---CGACG---------GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 50283 0.72 0.405898
Target:  5'- cCGGGUC-CGCCGCugcuGCCGCcGCaCCUCg -3'
miRNA:   3'- -GCCCAGcGUGGUG----CGGCGaCG-GGAGg -5'
14387 3' -62.8 NC_003521.1 + 88726 0.72 0.411471
Target:  5'- aCGGGUCuccucgcagagccgGCGCaCGuCGCCGUgGUCCUCCg -3'
miRNA:   3'- -GCCCAG--------------CGUG-GU-GCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 28758 0.72 0.413874
Target:  5'- gCGGGcCGCGCCAcCGCCcuagcGCUGCaCUUUCu -3'
miRNA:   3'- -GCCCaGCGUGGU-GCGG-----CGACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 167411 0.71 0.430112
Target:  5'- uGGGg-GCGCUucgGCUGCUGUCCUCCc -3'
miRNA:   3'- gCCCagCGUGGug-CGGCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 238012 0.71 0.43837
Target:  5'- uGGGUCGCcagucuucgucAUCGCGUCGUaggGCCCgUCCu -3'
miRNA:   3'- gCCCAGCG-----------UGGUGCGGCGa--CGGG-AGG- -5'
14387 3' -62.8 NC_003521.1 + 55454 0.71 0.43837
Target:  5'- uGGGcggCGCGCUggaagaggcacuGCGCCGCcuUGCCgUCCu -3'
miRNA:   3'- gCCCa--GCGUGG------------UGCGGCG--ACGGgAGG- -5'
14387 3' -62.8 NC_003521.1 + 179317 0.73 0.374981
Target:  5'- uGGuUCGCGCgCACGUCGUucgggUGCCCUCUu -3'
miRNA:   3'- gCCcAGCGUG-GUGCGGCG-----ACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 18764 0.73 0.374981
Target:  5'- aCGGGUCGCugCugcgACgGCUGgUGCCCcCCg -3'
miRNA:   3'- -GCCCAGCGugG----UG-CGGCgACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 86045 0.73 0.374981
Target:  5'- uGaGGUucCGCuCCACGCCGUUGCCCgagaaguagCCg -3'
miRNA:   3'- gC-CCA--GCGuGGUGCGGCGACGGGa--------GG- -5'
14387 3' -62.8 NC_003521.1 + 73774 0.84 0.069822
Target:  5'- cCGGcGUCaugaGCGCCACGCCGCUGCCCgagCUg -3'
miRNA:   3'- -GCC-CAG----CGUGGUGCGGCGACGGGa--GG- -5'
14387 3' -62.8 NC_003521.1 + 222017 0.75 0.261563
Target:  5'- gCGGGaaGCACUugGCCacgcgaaagcagcGCUgGCCCUCCa -3'
miRNA:   3'- -GCCCagCGUGGugCGG-------------CGA-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 109507 0.75 0.262137
Target:  5'- aGuGGUCGCGCCG-GCCGCUGCUCg-- -3'
miRNA:   3'- gC-CCAGCGUGGUgCGGCGACGGGagg -5'
14387 3' -62.8 NC_003521.1 + 23906 0.74 0.30492
Target:  5'- gGGGUCG-ACCGCcuCCGCUgccaccgcGCCCUCCu -3'
miRNA:   3'- gCCCAGCgUGGUGc-GGCGA--------CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 124125 0.73 0.345697
Target:  5'- uGuGGUgauuccCGC-CCGCGCCGCUGC-CUCCg -3'
miRNA:   3'- gC-CCA------GCGuGGUGCGGCGACGgGAGG- -5'
14387 3' -62.8 NC_003521.1 + 142607 0.73 0.352862
Target:  5'- ----cCGCcucCCACGCCGCUGCCCgCCg -3'
miRNA:   3'- gcccaGCGu--GGUGCGGCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 85560 0.73 0.352862
Target:  5'- aCGGGcCugagGCGCCGcCGCCGCcGCCCcCCa -3'
miRNA:   3'- -GCCCaG----CGUGGU-GCGGCGaCGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 119125 0.73 0.372727
Target:  5'- gGGGUCGgaacucggauaccuCACCGCGCaucacgGCCCUCCg -3'
miRNA:   3'- gCCCAGC--------------GUGGUGCGgcga--CGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.