miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 60717 1.1 0.001198
Target:  5'- gCGGGUCGCACCACGCCGCUGCCCUCCc -3'
miRNA:   3'- -GCCCAGCGUGGUGCGGCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 73774 0.84 0.069822
Target:  5'- cCGGcGUCaugaGCGCCACGCCGCUGCCCgagCUg -3'
miRNA:   3'- -GCC-CAG----CGUGGUGCGGCGACGGGa--GG- -5'
14387 3' -62.8 NC_003521.1 + 175114 0.8 0.125307
Target:  5'- aGGGcCGcCGCgGCGCCGCUGUCCUUCu -3'
miRNA:   3'- gCCCaGC-GUGgUGCGGCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 148948 0.79 0.162622
Target:  5'- cCGuGGUCGCACCGcCGCCGCcGUCCuggUCCg -3'
miRNA:   3'- -GC-CCAGCGUGGU-GCGGCGaCGGG---AGG- -5'
14387 3' -62.8 NC_003521.1 + 20320 0.78 0.166471
Target:  5'- -aGGagGcCACCACGCUGCUGCUCUCCc -3'
miRNA:   3'- gcCCagC-GUGGUGCGGCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 167667 0.78 0.19088
Target:  5'- -aGGUCGCaggccgaggcggcGCCGcCGCCGCUGCCC-CCg -3'
miRNA:   3'- gcCCAGCG-------------UGGU-GCGGCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 148898 0.77 0.214458
Target:  5'- cCGGGUC-CACCGCaucGCCGCcGCCgUCCu -3'
miRNA:   3'- -GCCCAGcGUGGUG---CGGCGaCGGgAGG- -5'
14387 3' -62.8 NC_003521.1 + 90840 0.76 0.224367
Target:  5'- gCGGGUgCGCGCCGCccguGCUGCUGCUgaCCa -3'
miRNA:   3'- -GCCCA-GCGUGGUG----CGGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 105003 0.76 0.23889
Target:  5'- aCGGGagcguucgucgcCGCGCCucccucCGCCGCUGCuCCUCCu -3'
miRNA:   3'- -GCCCa-----------GCGUGGu-----GCGGCGACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 139674 0.76 0.239957
Target:  5'- aGGGaCGCagACCGCGCCGC-GCUUUCCg -3'
miRNA:   3'- gCCCaGCG--UGGUGCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 91837 0.76 0.245351
Target:  5'- aCGGGcgugaaggugCGCGCCAgcacgcggaugaUGgCGCUGCCCUCCa -3'
miRNA:   3'- -GCCCa---------GCGUGGU------------GCgGCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 167108 0.75 0.25644
Target:  5'- aGcGGUCGCGgcCCGgGUCGCUGCgCUCCa -3'
miRNA:   3'- gC-CCAGCGU--GGUgCGGCGACGgGAGG- -5'
14387 3' -62.8 NC_003521.1 + 222017 0.75 0.261563
Target:  5'- gCGGGaaGCACUugGCCacgcgaaagcagcGCUgGCCCUCCa -3'
miRNA:   3'- -GCCCagCGUGGugCGG-------------CGA-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 109507 0.75 0.262137
Target:  5'- aGuGGUCGCGCCG-GCCGCUGCUCg-- -3'
miRNA:   3'- gC-CCAGCGUGGUgCGGCGACGGGagg -5'
14387 3' -62.8 NC_003521.1 + 221765 0.75 0.279846
Target:  5'- aGcGUCuGCGCCGCGCCGCcGUCCUCg -3'
miRNA:   3'- gCcCAG-CGUGGUGCGGCGaCGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 112340 0.75 0.292173
Target:  5'- cCGGcG-CGCACagccuCACGCCGCUGCCCauggacgugaUCCg -3'
miRNA:   3'- -GCC-CaGCGUG-----GUGCGGCGACGGG----------AGG- -5'
14387 3' -62.8 NC_003521.1 + 208958 0.75 0.292173
Target:  5'- gCGGuaccgcUCGCACCGCGCCGCcGUCUUCUu -3'
miRNA:   3'- -GCCc-----AGCGUGGUGCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 23906 0.74 0.30492
Target:  5'- gGGGUCG-ACCGCcuCCGCUgccaccgcGCCCUCCu -3'
miRNA:   3'- gCCCAGCgUGGUGc-GGCGA--------CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 45042 0.74 0.310794
Target:  5'- gGGGUCGagaGCCGCGCCGCUcgugccaggcaacGCgCgUCCu -3'
miRNA:   3'- gCCCAGCg--UGGUGCGGCGA-------------CG-GgAGG- -5'
14387 3' -62.8 NC_003521.1 + 109699 0.74 0.331682
Target:  5'- gGGGUCGCGCUgucccuucccgGCaGCCGCgccGCCCcgCCg -3'
miRNA:   3'- gCCCAGCGUGG-----------UG-CGGCGa--CGGGa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.