Results 21 - 40 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 205901 | 0.73 | 0.338637 |
Target: 5'- aGGGUCuGCGCCGCuacCUGCUGCgCUUCg -3' miRNA: 3'- gCCCAG-CGUGGUGc--GGCGACGgGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 212523 | 0.73 | 0.338637 |
Target: 5'- gGGGUCGC----UGCCGCUGCUCUCg -3' miRNA: 3'- gCCCAGCGugguGCGGCGACGGGAGg -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 124125 | 0.73 | 0.345697 |
Target: 5'- uGuGGUgauuccCGC-CCGCGCCGCUGC-CUCCg -3' miRNA: 3'- gC-CCA------GCGuGGUGCGGCGACGgGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 91059 | 0.73 | 0.352862 |
Target: 5'- uGaGG-CGUACCGCGCgGCcGCCCUCg -3' miRNA: 3'- gC-CCaGCGUGGUGCGgCGaCGGGAGg -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 85560 | 0.73 | 0.352862 |
Target: 5'- aCGGGcCugagGCGCCGcCGCCGCcGCCCcCCa -3' miRNA: 3'- -GCCCaG----CGUGGU-GCGGCGaCGGGaGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 142607 | 0.73 | 0.352862 |
Target: 5'- ----cCGCcucCCACGCCGCUGCCCgCCg -3' miRNA: 3'- gcccaGCGu--GGUGCGGCGACGGGaGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 1356 | 0.73 | 0.360131 |
Target: 5'- uGGGgcugaaCGCGCCGCGggccaCCGCUGUCC-CCg -3' miRNA: 3'- gCCCa-----GCGUGGUGC-----GGCGACGGGaGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 122109 | 0.73 | 0.367504 |
Target: 5'- cCGGuGcCGCGCCccuCGCCcaugagcCUGCCCUCCa -3' miRNA: 3'- -GCC-CaGCGUGGu--GCGGc------GACGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 139804 | 0.73 | 0.367504 |
Target: 5'- aCGGG-CGUGCCcgccaggacGCGCCcCUGUCCUCCc -3' miRNA: 3'- -GCCCaGCGUGG---------UGCGGcGACGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 119125 | 0.73 | 0.372727 |
Target: 5'- gGGGUCGgaacucggauaccuCACCGCGCaucacgGCCCUCCg -3' miRNA: 3'- gCCCAGC--------------GUGGUGCGgcga--CGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 86045 | 0.73 | 0.374981 |
Target: 5'- uGaGGUucCGCuCCACGCCGUUGCCCgagaaguagCCg -3' miRNA: 3'- gC-CCA--GCGuGGUGCGGCGACGGGa--------GG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 18764 | 0.73 | 0.374981 |
Target: 5'- aCGGGUCGCugCugcgACgGCUGgUGCCCcCCg -3' miRNA: 3'- -GCCCAGCGugG----UG-CGGCgACGGGaGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 179317 | 0.73 | 0.374981 |
Target: 5'- uGGuUCGCGCgCACGUCGUucgggUGCCCUCUu -3' miRNA: 3'- gCCcAGCGUG-GUGCGGCG-----ACGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 138055 | 0.73 | 0.378 |
Target: 5'- uGGGUCGC-CCGCgaccGCCGCggacagcugaggcgcUgGCCCUCCc -3' miRNA: 3'- gCCCAGCGuGGUG----CGGCG---------------A-CGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 85220 | 0.72 | 0.390239 |
Target: 5'- aGcGGUCGcCACCuccUGCUGCUGCUCUCg -3' miRNA: 3'- gC-CCAGC-GUGGu--GCGGCGACGGGAGg -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 103572 | 0.72 | 0.390239 |
Target: 5'- -aGGUCGC-CCGCGCagaaGCUGCgcacguacuCCUCCa -3' miRNA: 3'- gcCCAGCGuGGUGCGg---CGACG---------GGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 50283 | 0.72 | 0.405898 |
Target: 5'- cCGGGUC-CGCCGCugcuGCCGCcGCaCCUCg -3' miRNA: 3'- -GCCCAGcGUGGUG----CGGCGaCG-GGAGg -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 88726 | 0.72 | 0.411471 |
Target: 5'- aCGGGUCuccucgcagagccgGCGCaCGuCGCCGUgGUCCUCCg -3' miRNA: 3'- -GCCCAG--------------CGUG-GU-GCGGCGaCGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 28758 | 0.72 | 0.413874 |
Target: 5'- gCGGGcCGCGCCAcCGCCcuagcGCUGCaCUUUCu -3' miRNA: 3'- -GCCCaGCGUGGU-GCGG-----CGACG-GGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 137934 | 0.72 | 0.413874 |
Target: 5'- uCGGG-CGUGCUGCGCCuCUGCgCCUCg -3' miRNA: 3'- -GCCCaGCGUGGUGCGGcGACG-GGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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