miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 39421 0.66 0.756986
Target:  5'- uGGG-CGCcgagaaaAUGCCGCUGCCggCCg -3'
miRNA:   3'- gCCCaGCGugg----UGCGGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 132368 0.66 0.756986
Target:  5'- aGGGUaucaGCGgCACGCCGCacaCCCgcgaggucaUCCg -3'
miRNA:   3'- gCCCAg---CGUgGUGCGGCGac-GGG---------AGG- -5'
14387 3' -62.8 NC_003521.1 + 224034 0.66 0.756104
Target:  5'- uCGGGgcggGCGCCGuCGCCcCUGggacucuucgucaCCCUCCu -3'
miRNA:   3'- -GCCCag--CGUGGU-GCGGcGAC-------------GGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 110524 0.66 0.74813
Target:  5'- -uGGaUGCGCgGCGCCGCgGCCUcgCCc -3'
miRNA:   3'- gcCCaGCGUGgUGCGGCGaCGGGa-GG- -5'
14387 3' -62.8 NC_003521.1 + 30282 0.66 0.74813
Target:  5'- gCGGGcgCGCuCCACGUCGUcgaaguaGCUCUUCa -3'
miRNA:   3'- -GCCCa-GCGuGGUGCGGCGa------CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 197944 0.66 0.74813
Target:  5'- aCGGGcgCGCGCUugaGCUGCgcgaUGCCCUg- -3'
miRNA:   3'- -GCCCa-GCGUGGug-CGGCG----ACGGGAgg -5'
14387 3' -62.8 NC_003521.1 + 105313 0.66 0.74813
Target:  5'- uGGGgacgcCGCGCgACGUCGCcGCUUUCg -3'
miRNA:   3'- gCCCa----GCGUGgUGCGGCGaCGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 105823 0.66 0.74813
Target:  5'- aGGG-CGaCGCCACGgC-CUGCCC-CUg -3'
miRNA:   3'- gCCCaGC-GUGGUGCgGcGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 56906 0.66 0.74813
Target:  5'- uGGuGUUGCACCgguacaGCGCCGUgacgGCCguggCUCUg -3'
miRNA:   3'- gCC-CAGCGUGG------UGCGGCGa---CGG----GAGG- -5'
14387 3' -62.8 NC_003521.1 + 153438 0.66 0.74813
Target:  5'- -cGG-CGuCACCucCGCCGCcucGUCCUCCa -3'
miRNA:   3'- gcCCaGC-GUGGu-GCGGCGa--CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 133479 0.66 0.74813
Target:  5'- cCGaGGUCGaggauCACCugGCGCCGCUGCUgCggggCCc -3'
miRNA:   3'- -GC-CCAGC-----GUGG--UGCGGCGACGG-Ga---GG- -5'
14387 3' -62.8 NC_003521.1 + 165894 0.66 0.74813
Target:  5'- gCGGGUa-CACCACcCCGCgcugccggGCCgaCUCCa -3'
miRNA:   3'- -GCCCAgcGUGGUGcGGCGa-------CGG--GAGG- -5'
14387 3' -62.8 NC_003521.1 + 12194 0.66 0.74813
Target:  5'- -uGGUgGuUugCGCGCCGCgggGUUCUCCu -3'
miRNA:   3'- gcCCAgC-GugGUGCGGCGa--CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 34625 0.66 0.74813
Target:  5'- gGGGUCGCAgcggaUCAUGCCcuugGCgaaaaaGCCCcCCa -3'
miRNA:   3'- gCCCAGCGU-----GGUGCGG----CGa-----CGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 226892 0.66 0.74813
Target:  5'- gCGGGg-GCACCACggcgGCCaGCgcGgCCUCCg -3'
miRNA:   3'- -GCCCagCGUGGUG----CGG-CGa-CgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 201584 0.66 0.74813
Target:  5'- uGGGgcugaaCGC-CCGCGggccaCCGCUGUCC-CCg -3'
miRNA:   3'- gCCCa-----GCGuGGUGC-----GGCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 53975 0.66 0.74813
Target:  5'- cCGuGGUCGUgAUCGCGCucgaCGUUGCCCaUCUu -3'
miRNA:   3'- -GC-CCAGCG-UGGUGCG----GCGACGGG-AGG- -5'
14387 3' -62.8 NC_003521.1 + 120570 0.66 0.74813
Target:  5'- uGGGUgucgaggcgaUGCACgGCGCgGCcGCCggCUCCu -3'
miRNA:   3'- gCCCA----------GCGUGgUGCGgCGaCGG--GAGG- -5'
14387 3' -62.8 NC_003521.1 + 223755 0.66 0.74724
Target:  5'- uGGGUCGcCGCCagcgguaucgucgGCGCUGCUGgUgCUgCCg -3'
miRNA:   3'- gCCCAGC-GUGG-------------UGCGGCGAC-GgGA-GG- -5'
14387 3' -62.8 NC_003521.1 + 22273 0.66 0.74724
Target:  5'- gGGGUC-UACCACgGCCucgccugGCaGCUCUCCu -3'
miRNA:   3'- gCCCAGcGUGGUG-CGG-------CGaCGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.