miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 111867 0.66 0.730167
Target:  5'- -----aGCGCCACGCCGCcagcCCCUCg -3'
miRNA:   3'- gcccagCGUGGUGCGGCGac--GGGAGg -5'
14387 3' -62.8 NC_003521.1 + 129964 0.66 0.721074
Target:  5'- gCGGGcCGCugCucuacgugcacCGUCGCUGCCgCUgCg -3'
miRNA:   3'- -GCCCaGCGugGu----------GCGGCGACGG-GAgG- -5'
14387 3' -62.8 NC_003521.1 + 12194 0.66 0.74813
Target:  5'- -uGGUgGuUugCGCGCCGCgggGUUCUCCu -3'
miRNA:   3'- gcCCAgC-GugGUGCGGCGa--CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 239751 0.66 0.72472
Target:  5'- gGGGUCGCGCgGCGagaGCUGgcgcaggucgguggcCCCgacgCCg -3'
miRNA:   3'- gCCCAGCGUGgUGCgg-CGAC---------------GGGa---GG- -5'
14387 3' -62.8 NC_003521.1 + 30282 0.66 0.74813
Target:  5'- gCGGGcgCGCuCCACGUCGUcgaaguaGCUCUUCa -3'
miRNA:   3'- -GCCCa-GCGuGGUGCGGCGa------CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 104692 0.66 0.721074
Target:  5'- gGGGcCGUggGCgGCGUCGacgUGCCCUCg -3'
miRNA:   3'- gCCCaGCG--UGgUGCGGCg--ACGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 167572 0.66 0.739188
Target:  5'- aCGGcGcUCGuCGUCACGCCGCUGCUgUUg -3'
miRNA:   3'- -GCC-C-AGC-GUGGUGCGGCGACGGgAGg -5'
14387 3' -62.8 NC_003521.1 + 202582 0.66 0.73649
Target:  5'- uGGGcCGCgucucgccccgcccGCCGagGCCGCccUGCgCCUCCu -3'
miRNA:   3'- gCCCaGCG--------------UGGUg-CGGCG--ACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 146175 0.66 0.739188
Target:  5'- uGGGcCGCGaguugCugGCCgGCggacgGCCCUUCa -3'
miRNA:   3'- gCCCaGCGUg----GugCGG-CGa----CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 68360 0.66 0.739188
Target:  5'- -cGG-CGCACCGCuGCCGgccCUGCCUcCCc -3'
miRNA:   3'- gcCCaGCGUGGUG-CGGC---GACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 75548 0.66 0.730167
Target:  5'- aGcGG-CGCcggcggcgGCUACGCCaGC-GCCCUCCu -3'
miRNA:   3'- gC-CCaGCG--------UGGUGCGG-CGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 142334 0.66 0.727446
Target:  5'- uGGGUgCGCgaggccgccGCCACgGCCGCcGCggccgccgccgccuCCUCCa -3'
miRNA:   3'- gCCCA-GCG---------UGGUG-CGGCGaCG--------------GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 162301 0.66 0.739188
Target:  5'- cCGGGagucCGCGgaauCCGCGUCGCguguccggucgGCCCgUCCg -3'
miRNA:   3'- -GCCCa---GCGU----GGUGCGGCGa----------CGGG-AGG- -5'
14387 3' -62.8 NC_003521.1 + 134716 0.66 0.739188
Target:  5'- aCGGc---CGCCACGCC-CUGCCCgaggCCu -3'
miRNA:   3'- -GCCcagcGUGGUGCGGcGACGGGa---GG- -5'
14387 3' -62.8 NC_003521.1 + 165894 0.66 0.74813
Target:  5'- gCGGGUa-CACCACcCCGCgcugccggGCCgaCUCCa -3'
miRNA:   3'- -GCCCAgcGUGGUGcGGCGa-------CGG--GAGG- -5'
14387 3' -62.8 NC_003521.1 + 223973 0.66 0.739188
Target:  5'- aGcGGUCguugucagGCACCACGUgaUUGUCCUCCu -3'
miRNA:   3'- gC-CCAG--------CGUGGUGCGgcGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 54521 0.66 0.721074
Target:  5'- aGGaUCuGCACgGCGCCGCUgggGCCCg-- -3'
miRNA:   3'- gCCcAG-CGUGgUGCGGCGA---CGGGagg -5'
14387 3' -62.8 NC_003521.1 + 154014 0.66 0.733785
Target:  5'- aCGGGUCGCGCagCACcuggugcaugcucuuGCCGCggcaggcGCCCauaaagCCg -3'
miRNA:   3'- -GCCCAGCGUG--GUG---------------CGGCGa------CGGGa-----GG- -5'
14387 3' -62.8 NC_003521.1 + 59708 0.66 0.769224
Target:  5'- uCGGGUCGCcUgguggcgcaauucgaCACGCCGgauCUGgCCUUCg -3'
miRNA:   3'- -GCCCAGCGuG---------------GUGCGGC---GACgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 128927 0.66 0.739188
Target:  5'- aGGGccuggCGCGCCAgCGUgGC-GUUCUCCa -3'
miRNA:   3'- gCCCa----GCGUGGU-GCGgCGaCGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.