Results 1 - 20 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 175114 | 0.8 | 0.125307 |
Target: 5'- aGGGcCGcCGCgGCGCCGCUGUCCUUCu -3' miRNA: 3'- gCCCaGC-GUGgUGCGGCGACGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 91059 | 0.73 | 0.352862 |
Target: 5'- uGaGG-CGUACCGCGCgGCcGCCCUCg -3' miRNA: 3'- gC-CCaGCGUGGUGCGgCGaCGGGAGg -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 139804 | 0.73 | 0.367504 |
Target: 5'- aCGGG-CGUGCCcgccaggacGCGCCcCUGUCCUCCc -3' miRNA: 3'- -GCCCaGCGUGG---------UGCGGcGACGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 59708 | 0.66 | 0.769224 |
Target: 5'- uCGGGUCGCcUgguggcgcaauucgaCACGCCGgauCUGgCCUUCg -3' miRNA: 3'- -GCCCAGCGuG---------------GUGCGGC---GACgGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 148898 | 0.77 | 0.214458 |
Target: 5'- cCGGGUC-CACCGCaucGCCGCcGCCgUCCu -3' miRNA: 3'- -GCCCAGcGUGGUG---CGGCGaCGGgAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 90840 | 0.76 | 0.224367 |
Target: 5'- gCGGGUgCGCGCCGCccguGCUGCUGCUgaCCa -3' miRNA: 3'- -GCCCA-GCGUGGUG----CGGCGACGGgaGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 139674 | 0.76 | 0.239957 |
Target: 5'- aGGGaCGCagACCGCGCCGC-GCUUUCCg -3' miRNA: 3'- gCCCaGCG--UGGUGCGGCGaCGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 91837 | 0.76 | 0.245351 |
Target: 5'- aCGGGcgugaaggugCGCGCCAgcacgcggaugaUGgCGCUGCCCUCCa -3' miRNA: 3'- -GCCCa---------GCGUGGU------------GCgGCGACGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 112340 | 0.75 | 0.292173 |
Target: 5'- cCGGcG-CGCACagccuCACGCCGCUGCCCauggacgugaUCCg -3' miRNA: 3'- -GCC-CaGCGUG-----GUGCGGCGACGGG----------AGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 212523 | 0.73 | 0.338637 |
Target: 5'- gGGGUCGC----UGCCGCUGCUCUCg -3' miRNA: 3'- gCCCAGCGugguGCGGCGACGGGAGg -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 45042 | 0.74 | 0.310794 |
Target: 5'- gGGGUCGagaGCCGCGCCGCUcgugccaggcaacGCgCgUCCu -3' miRNA: 3'- gCCCAGCg--UGGUGCGGCGA-------------CG-GgAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 221765 | 0.75 | 0.279846 |
Target: 5'- aGcGUCuGCGCCGCGCCGCcGUCCUCg -3' miRNA: 3'- gCcCAG-CGUGGUGCGGCGaCGGGAGg -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 148948 | 0.79 | 0.162622 |
Target: 5'- cCGuGGUCGCACCGcCGCCGCcGUCCuggUCCg -3' miRNA: 3'- -GC-CCAGCGUGGU-GCGGCGaCGGG---AGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 109699 | 0.74 | 0.331682 |
Target: 5'- gGGGUCGCGCUgucccuucccgGCaGCCGCgccGCCCcgCCg -3' miRNA: 3'- gCCCAGCGUGG-----------UG-CGGCGa--CGGGa-GG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 20320 | 0.78 | 0.166471 |
Target: 5'- -aGGagGcCACCACGCUGCUGCUCUCCc -3' miRNA: 3'- gcCCagC-GUGGUGCGGCGACGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 167108 | 0.75 | 0.25644 |
Target: 5'- aGcGGUCGCGgcCCGgGUCGCUGCgCUCCa -3' miRNA: 3'- gC-CCAGCGU--GGUgCGGCGACGgGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 205901 | 0.73 | 0.338637 |
Target: 5'- aGGGUCuGCGCCGCuacCUGCUGCgCUUCg -3' miRNA: 3'- gCCCAG-CGUGGUGc--GGCGACGgGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 1356 | 0.73 | 0.360131 |
Target: 5'- uGGGgcugaaCGCGCCGCGggccaCCGCUGUCC-CCg -3' miRNA: 3'- gCCCa-----GCGUGGUGC-----GGCGACGGGaGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 167667 | 0.78 | 0.19088 |
Target: 5'- -aGGUCGCaggccgaggcggcGCCGcCGCCGCUGCCC-CCg -3' miRNA: 3'- gcCCAGCG-------------UGGU-GCGGCGACGGGaGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 105003 | 0.76 | 0.23889 |
Target: 5'- aCGGGagcguucgucgcCGCGCCucccucCGCCGCUGCuCCUCCu -3' miRNA: 3'- -GCCCa-----------GCGUGGu-----GCGGCGACG-GGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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