miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 44403 0.67 0.674781
Target:  5'- cCGGG-CGaCAgCGacugucugUGCCGCUGCCCgCCc -3'
miRNA:   3'- -GCCCaGC-GUgGU--------GCGGCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 44744 0.67 0.665405
Target:  5'- gGGGUCuGCAgcucUCGCGCCaguccaccucGCcgGCCUUCCg -3'
miRNA:   3'- gCCCAG-CGU----GGUGCGG----------CGa-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 45042 0.74 0.310794
Target:  5'- gGGGUCGagaGCCGCGCCGCUcgugccaggcaacGCgCgUCCu -3'
miRNA:   3'- gCCCAGCg--UGGUGCGGCGA-------------CG-GgAGG- -5'
14387 3' -62.8 NC_003521.1 + 45405 0.68 0.627742
Target:  5'- uGGGUUuuCACCAgguaGCCGgUGCCCgCCg -3'
miRNA:   3'- gCCCAGc-GUGGUg---CGGCgACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 47996 0.68 0.646593
Target:  5'- aCGGa-CGCGCCGCcgggcuucugcgGCUGCUGCCagcgaUCCg -3'
miRNA:   3'- -GCCcaGCGUGGUG------------CGGCGACGGg----AGG- -5'
14387 3' -62.8 NC_003521.1 + 49677 0.66 0.756986
Target:  5'- cCGGGcgaGCGCgGCGCUGUcGCCgUCa -3'
miRNA:   3'- -GCCCag-CGUGgUGCGGCGaCGGgAGg -5'
14387 3' -62.8 NC_003521.1 + 49820 0.66 0.765748
Target:  5'- uGGGcgccgUGCAgUGCGCCGUgcagacgGCCgUCCa -3'
miRNA:   3'- gCCCa----GCGUgGUGCGGCGa------CGGgAGG- -5'
14387 3' -62.8 NC_003521.1 + 50283 0.72 0.405898
Target:  5'- cCGGGUC-CGCCGCugcuGCCGCcGCaCCUCg -3'
miRNA:   3'- -GCCCAGcGUGGUG----CGGCGaCG-GGAGg -5'
14387 3' -62.8 NC_003521.1 + 53152 0.67 0.656007
Target:  5'- aGGGcgCGUAacaguaCACGCgGCcGCCCUCg -3'
miRNA:   3'- gCCCa-GCGUg-----GUGCGgCGaCGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 53546 0.69 0.543711
Target:  5'- cCGGGUCGagguGCCGCuGUCGCgucucucuaGCUCUCCc -3'
miRNA:   3'- -GCCCAGCg---UGGUG-CGGCGa--------CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 53975 0.66 0.74813
Target:  5'- cCGuGGUCGUgAUCGCGCucgaCGUUGCCCaUCUu -3'
miRNA:   3'- -GC-CCAGCG-UGGUGCG----GCGACGGG-AGG- -5'
14387 3' -62.8 NC_003521.1 + 54018 0.69 0.543711
Target:  5'- -uGGUCGC-CCACGCCGUgGCgCCUg- -3'
miRNA:   3'- gcCCAGCGuGGUGCGGCGaCG-GGAgg -5'
14387 3' -62.8 NC_003521.1 + 54521 0.66 0.721074
Target:  5'- aGGaUCuGCACgGCGCCGCUgggGCCCg-- -3'
miRNA:   3'- gCCcAG-CGUGgUGCGGCGA---CGGGagg -5'
14387 3' -62.8 NC_003521.1 + 55454 0.71 0.43837
Target:  5'- uGGGcggCGCGCUggaagaggcacuGCGCCGCcuUGCCgUCCu -3'
miRNA:   3'- gCCCa--GCGUGG------------UGCGGCG--ACGGgAGG- -5'
14387 3' -62.8 NC_003521.1 + 55526 0.69 0.59012
Target:  5'- aCGGGUaCGCGCagcgaGCGCCGC-GCCgaCg -3'
miRNA:   3'- -GCCCA-GCGUGg----UGCGGCGaCGGgaGg -5'
14387 3' -62.8 NC_003521.1 + 55883 0.68 0.627742
Target:  5'- uGGGaCGCuACCAUGCgcgguCGCcGaCCCUCCg -3'
miRNA:   3'- gCCCaGCG-UGGUGCG-----GCGaC-GGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 56458 0.66 0.765748
Target:  5'- -aGGUCcgagagGCGCCGCGCCaCgGCCCgCCc -3'
miRNA:   3'- gcCCAG------CGUGGUGCGGcGaCGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 56630 0.69 0.55291
Target:  5'- aGaGGUccacgaagaagCGCACCACggGCCGgUGCaCCUCCc -3'
miRNA:   3'- gC-CCA-----------GCGUGGUG--CGGCgACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 56904 0.67 0.693435
Target:  5'- uGGccGUCGCGacaGCGCCGCaGCaccgCCUCCa -3'
miRNA:   3'- gCC--CAGCGUgg-UGCGGCGaCG----GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 56906 0.66 0.74813
Target:  5'- uGGuGUUGCACCgguacaGCGCCGUgacgGCCguggCUCUg -3'
miRNA:   3'- gCC-CAGCGUGG------UGCGGCGa---CGG----GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.