miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 5' -53.4 NC_003521.1 + 19020 0.67 0.981756
Target:  5'- uGUGACGUGCca-GAUAUCGaGCgGACGc -3'
miRNA:   3'- -CACUGCGCGuugCUGUAGCaCG-CUGU- -5'
14387 5' -53.4 NC_003521.1 + 7436 0.67 0.981756
Target:  5'- -aGACG-GCAGCGGCAgcucCGgaucccgGCGACGc -3'
miRNA:   3'- caCUGCgCGUUGCUGUa---GCa------CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 50770 0.67 0.981756
Target:  5'- cGUGAagacCGCGCGGCGGuCcugGUCGaucgGCGACGg -3'
miRNA:   3'- -CACU----GCGCGUUGCU-G---UAGCa---CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 74118 0.67 0.981756
Target:  5'- -cGACGCcCAugGGCGcCGUGCagGACGa -3'
miRNA:   3'- caCUGCGcGUugCUGUaGCACG--CUGU- -5'
14387 5' -53.4 NC_003521.1 + 46635 0.67 0.979668
Target:  5'- -aGGCG-GUAGaCGGCGUCG-GCGGCGg -3'
miRNA:   3'- caCUGCgCGUU-GCUGUAGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 15201 0.67 0.979668
Target:  5'- -cGugGUGgAuccCGACAUCGUGgGGCu -3'
miRNA:   3'- caCugCGCgUu--GCUGUAGCACgCUGu -5'
14387 5' -53.4 NC_003521.1 + 76150 0.67 0.979668
Target:  5'- -cGACGCGCAcACGGCgcagguacagGUCGUcGCGGg- -3'
miRNA:   3'- caCUGCGCGU-UGCUG----------UAGCA-CGCUgu -5'
14387 5' -53.4 NC_003521.1 + 186164 0.67 0.979668
Target:  5'- --uGCGUGCAcggccAgGACAUCGUGCG-CGa -3'
miRNA:   3'- cacUGCGCGU-----UgCUGUAGCACGCuGU- -5'
14387 5' -53.4 NC_003521.1 + 42560 0.67 0.979668
Target:  5'- gGUGcCGCuGgGACGGCuAUCGcUGCGGCGu -3'
miRNA:   3'- -CACuGCG-CgUUGCUG-UAGC-ACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 191056 0.67 0.979008
Target:  5'- -cGACGCucaguucuguucccGCGGCGACcgUGgugGCGGCGg -3'
miRNA:   3'- caCUGCG--------------CGUUGCUGuaGCa--CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 119786 0.67 0.977408
Target:  5'- -cGGCGCaGCGGCGACGagGU-CGGCGc -3'
miRNA:   3'- caCUGCG-CGUUGCUGUagCAcGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 234845 0.67 0.977408
Target:  5'- -cGGCGauaGCGugGGCAUCG-GCGuCGu -3'
miRNA:   3'- caCUGCg--CGUugCUGUAGCaCGCuGU- -5'
14387 5' -53.4 NC_003521.1 + 113835 0.67 0.977408
Target:  5'- -cGuCGgGCAGCGGCAgcggggCGgccgGCGACGa -3'
miRNA:   3'- caCuGCgCGUUGCUGUa-----GCa---CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 6391 0.67 0.977408
Target:  5'- -gGGCGcCGCAGCuACcgCGgcgGCGACGg -3'
miRNA:   3'- caCUGC-GCGUUGcUGuaGCa--CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 77703 0.67 0.977408
Target:  5'- -aGACaGcCGUGGCGGCGUUGUugGCGACGg -3'
miRNA:   3'- caCUG-C-GCGUUGCUGUAGCA--CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 127304 0.67 0.977408
Target:  5'- gGUGGCGCGCcuCGAUGUUGgcguuggucaGCGGCu -3'
miRNA:   3'- -CACUGCGCGuuGCUGUAGCa---------CGCUGu -5'
14387 5' -53.4 NC_003521.1 + 132591 0.67 0.977408
Target:  5'- aUGAUGgaaGCGGCGGCGUCG-GCGuccGCAa -3'
miRNA:   3'- cACUGCg--CGUUGCUGUAGCaCGC---UGU- -5'
14387 5' -53.4 NC_003521.1 + 192043 0.67 0.974967
Target:  5'- -cGGCGUGCGcggcagacGCGGCGUCc-GCGGCGg -3'
miRNA:   3'- caCUGCGCGU--------UGCUGUAGcaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 19185 0.67 0.974713
Target:  5'- -cGACGUGCAcgaGCuGCAgaagacggaucgcUCGUGCGACc -3'
miRNA:   3'- caCUGCGCGU---UGcUGU-------------AGCACGCUGu -5'
14387 5' -53.4 NC_003521.1 + 123681 0.68 0.973414
Target:  5'- -cGGCGCGCuGCGGCGUgGcgguggaagaggagGCGGCGg -3'
miRNA:   3'- caCUGCGCGuUGCUGUAgCa-------------CGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.