miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 5' -53.4 NC_003521.1 + 174176 0.67 0.985444
Target:  5'- -aGGcCGCGCAcgaagguCGACAg-GUGCGACGc -3'
miRNA:   3'- caCU-GCGCGUu------GCUGUagCACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 145028 0.67 0.985444
Target:  5'- -cGACGCGCuggaucGCGugGcCGaGCGGCAc -3'
miRNA:   3'- caCUGCGCGu-----UGCugUaGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 47718 0.67 0.985444
Target:  5'- uUGACGUcaGACGGCAUUGU-CGACGc -3'
miRNA:   3'- cACUGCGcgUUGCUGUAGCAcGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 117308 0.67 0.985444
Target:  5'- -cGACGCGgAuugcggGCGGCAgCG-GCGACGa -3'
miRNA:   3'- caCUGCGCgU------UGCUGUaGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 112751 0.67 0.985444
Target:  5'- ----aGCGCGagcccauggGCGGCAUCG-GCGGCGc -3'
miRNA:   3'- cacugCGCGU---------UGCUGUAGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 20717 0.67 0.985444
Target:  5'- cUGGCGCGUGACGugAugaUCGUcaGCGGa- -3'
miRNA:   3'- cACUGCGCGUUGCugU---AGCA--CGCUgu -5'
14387 5' -53.4 NC_003521.1 + 98628 0.67 0.985444
Target:  5'- -gGGCGagaGCGGCGGCggCGguaGCGGCGu -3'
miRNA:   3'- caCUGCg--CGUUGCUGuaGCa--CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 53170 0.67 0.985444
Target:  5'- -cGGCG-GCGAgGAgGUCG-GCGACGc -3'
miRNA:   3'- caCUGCgCGUUgCUgUAGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 84759 0.67 0.983679
Target:  5'- -gGGCGCggcgGCGGCGACGUUGU-UGGCAc -3'
miRNA:   3'- caCUGCG----CGUUGCUGUAGCAcGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 137397 0.67 0.983679
Target:  5'- -aGACGCGCGuCGACAUCaacccCGACc -3'
miRNA:   3'- caCUGCGCGUuGCUGUAGcac--GCUGu -5'
14387 5' -53.4 NC_003521.1 + 69188 0.67 0.983679
Target:  5'- -cGGcCGCGCuagacauaccCGACGUCG-GCGGCAc -3'
miRNA:   3'- caCU-GCGCGuu--------GCUGUAGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 55011 0.67 0.983679
Target:  5'- -gGGCuuaagGCGCAGCGccaGCGUCG-GCGGCu -3'
miRNA:   3'- caCUG-----CGCGUUGC---UGUAGCaCGCUGu -5'
14387 5' -53.4 NC_003521.1 + 114640 0.67 0.983679
Target:  5'- cGUGAaccgggUGCGCAcCGACAUgggCGUGCGcguGCAg -3'
miRNA:   3'- -CACU------GCGCGUuGCUGUA---GCACGC---UGU- -5'
14387 5' -53.4 NC_003521.1 + 74031 0.67 0.983679
Target:  5'- --aGCG-GCGGCGGCAUCGUcCGACc -3'
miRNA:   3'- cacUGCgCGUUGCUGUAGCAcGCUGu -5'
14387 5' -53.4 NC_003521.1 + 73709 0.67 0.983679
Target:  5'- cGUGGaGCGCAGCGACc-CGggccGCGACc -3'
miRNA:   3'- -CACUgCGCGUUGCUGuaGCa---CGCUGu -5'
14387 5' -53.4 NC_003521.1 + 74118 0.67 0.981756
Target:  5'- -cGACGCcCAugGGCGcCGUGCagGACGa -3'
miRNA:   3'- caCUGCGcGUugCUGUaGCACG--CUGU- -5'
14387 5' -53.4 NC_003521.1 + 19020 0.67 0.981756
Target:  5'- uGUGACGUGCca-GAUAUCGaGCgGACGc -3'
miRNA:   3'- -CACUGCGCGuugCUGUAGCaCG-CUGU- -5'
14387 5' -53.4 NC_003521.1 + 104243 0.67 0.981756
Target:  5'- aGUGAUcgagcaccagGUGCAGCGGCAgcugccagUCG-GCGGCGa -3'
miRNA:   3'- -CACUG----------CGCGUUGCUGU--------AGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 71737 0.67 0.981756
Target:  5'- -aGACGCaccGCAccauCGugGUCGUGCcGCAg -3'
miRNA:   3'- caCUGCG---CGUu---GCugUAGCACGcUGU- -5'
14387 5' -53.4 NC_003521.1 + 7436 0.67 0.981756
Target:  5'- -aGACG-GCAGCGGCAgcucCGgaucccgGCGACGc -3'
miRNA:   3'- caCUGCgCGUUGCUGUa---GCa------CGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.