Results 41 - 60 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14387 | 5' | -53.4 | NC_003521.1 | + | 55728 | 0.7 | 0.912559 |
Target: 5'- -cGGCGCGCAGCGccucccaGCGcgCGgGCGGCAg -3' miRNA: 3'- caCUGCGCGUUGC-------UGUa-GCaCGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 76062 | 0.7 | 0.913142 |
Target: 5'- -aGACGCuuGAUGACGgcgaUGUGCGGCAg -3' miRNA: 3'- caCUGCGcgUUGCUGUa---GCACGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 88510 | 0.7 | 0.913142 |
Target: 5'- --cACGCGCAGCGACucgcagcCGUGCaGGCGc -3' miRNA: 3'- cacUGCGCGUUGCUGua-----GCACG-CUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 192310 | 0.7 | 0.913142 |
Target: 5'- ---cCGCgGUAGCGGCGUCG-GCGGCAc -3' miRNA: 3'- cacuGCG-CGUUGCUGUAGCaCGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 98217 | 0.7 | 0.91885 |
Target: 5'- -cGGCGgGCAGCGGCGUgGgagGCGGgGa -3' miRNA: 3'- caCUGCgCGUUGCUGUAgCa--CGCUgU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 135248 | 0.7 | 0.924325 |
Target: 5'- -cGGCG-GCGACGACA-CG-GCGGCGg -3' miRNA: 3'- caCUGCgCGUUGCUGUaGCaCGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 225846 | 0.7 | 0.924325 |
Target: 5'- -cGGCGCGCu-CGugGUgGUGCgGGCAc -3' miRNA: 3'- caCUGCGCGuuGCugUAgCACG-CUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 167673 | 0.7 | 0.928538 |
Target: 5'- aGUGACGUGCucgcgguugcgguGACGACGcUCGUggaggagGCGGCGg -3' miRNA: 3'- -CACUGCGCG-------------UUGCUGU-AGCA-------CGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 113348 | 0.7 | 0.929568 |
Target: 5'- gGUGACGCGCAucuCGGCGcuggCGgGCGuCAa -3' miRNA: 3'- -CACUGCGCGUu--GCUGUa---GCaCGCuGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 186757 | 0.7 | 0.929568 |
Target: 5'- cUGGgGCuCGGCGGCAUCGgcggagGCGGCGg -3' miRNA: 3'- cACUgCGcGUUGCUGUAGCa-----CGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 141893 | 0.7 | 0.929568 |
Target: 5'- uGUGAUGCGC-ACGGC--CGUGCGcgaGCAg -3' miRNA: 3'- -CACUGCGCGuUGCUGuaGCACGC---UGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 92768 | 0.7 | 0.929568 |
Target: 5'- -cGACGCGCGACaucucguACAUgG-GCGACAg -3' miRNA: 3'- caCUGCGCGUUGc------UGUAgCaCGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 176292 | 0.7 | 0.929568 |
Target: 5'- -aGACGgGCGuCGGCGUCGUcGCG-CAa -3' miRNA: 3'- caCUGCgCGUuGCUGUAGCA-CGCuGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 224806 | 0.7 | 0.929568 |
Target: 5'- -gGACGCGCGugGcguaggGCGUC-UGCGGCu -3' miRNA: 3'- caCUGCGCGUugC------UGUAGcACGCUGu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 57376 | 0.7 | 0.929568 |
Target: 5'- cGUGACGCGCcAgGGCGUCGaucucGCGcCAc -3' miRNA: 3'- -CACUGCGCGuUgCUGUAGCa----CGCuGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 76349 | 0.7 | 0.934579 |
Target: 5'- gGUGACGgcUGCGGCGGCGgcagCG-GCGACc -3' miRNA: 3'- -CACUGC--GCGUUGCUGUa---GCaCGCUGu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 165588 | 0.7 | 0.934579 |
Target: 5'- -cGGCGUGCAugaagggcACGAUGUCGUgguugGCGGCGu -3' miRNA: 3'- caCUGCGCGU--------UGCUGUAGCA-----CGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 175437 | 0.69 | 0.939358 |
Target: 5'- aGUGGCGUGCu-CGGCGUaCGaucgGCGGCGc -3' miRNA: 3'- -CACUGCGCGuuGCUGUA-GCa---CGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 88016 | 0.69 | 0.939358 |
Target: 5'- cUGACGUGCGugGACAg-GUGCaGCu -3' miRNA: 3'- cACUGCGCGUugCUGUagCACGcUGu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 18719 | 0.69 | 0.943906 |
Target: 5'- cUGugGCugccgcugGCGGCGGCgAUCGUgGCGGCGg -3' miRNA: 3'- cACugCG--------CGUUGCUG-UAGCA-CGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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