Results 21 - 40 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14387 | 5' | -53.4 | NC_003521.1 | + | 97823 | 0.72 | 0.843888 |
Target: 5'- uUGACGCGgAcggcGCGACcgCcgGUGCGACAg -3' miRNA: 3'- cACUGCGCgU----UGCUGuaG--CACGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 213115 | 0.72 | 0.843888 |
Target: 5'- -cGACGCGCugggugUGGCGUgGUGCGGCc -3' miRNA: 3'- caCUGCGCGuu----GCUGUAgCACGCUGu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 20170 | 0.72 | 0.843888 |
Target: 5'- -cGACG-GCGACGACGguccgCGUcGCGACGu -3' miRNA: 3'- caCUGCgCGUUGCUGUa----GCA-CGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 107511 | 0.72 | 0.843888 |
Target: 5'- aUGGCGUGUAugGugGUUGUaGUGACGu -3' miRNA: 3'- cACUGCGCGUugCugUAGCA-CGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 90807 | 0.72 | 0.843888 |
Target: 5'- -cGcACGUGCAcgugaaggugGCGuCGUCGUGCGGCGg -3' miRNA: 3'- caC-UGCGCGU----------UGCuGUAGCACGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 164517 | 0.72 | 0.843888 |
Target: 5'- cGUGACGCGCGACGuGCuGUCGUuGCucuucGACGa -3' miRNA: 3'- -CACUGCGCGUUGC-UG-UAGCA-CG-----CUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 27350 | 0.72 | 0.843888 |
Target: 5'- aUGGCGUGCAcCGGCGccgucaugaCGUGCGACGc -3' miRNA: 3'- cACUGCGCGUuGCUGUa--------GCACGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 169439 | 0.72 | 0.843888 |
Target: 5'- --cACGCGgaCGACGGCGUCGgcgGCGGCGg -3' miRNA: 3'- cacUGCGC--GUUGCUGUAGCa--CGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 32380 | 0.72 | 0.851748 |
Target: 5'- -gGugGCGCGugGcCAgguccucgggCGUGCGACAc -3' miRNA: 3'- caCugCGCGUugCuGUa---------GCACGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 198255 | 0.72 | 0.866881 |
Target: 5'- cUGACGcCGCAGCGAUAgcCGUcccaGCGGCAc -3' miRNA: 3'- cACUGC-GCGUUGCUGUa-GCA----CGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 102790 | 0.71 | 0.874142 |
Target: 5'- aUGACGCGcCGGCGGCcgccagcUCGgGCGGCAg -3' miRNA: 3'- cACUGCGC-GUUGCUGu------AGCaCGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 143810 | 0.71 | 0.881193 |
Target: 5'- cGUGAaccCGCGCAaccccaGCGAgAUCGUGCG-CGc -3' miRNA: 3'- -CACU---GCGCGU------UGCUgUAGCACGCuGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 189352 | 0.71 | 0.881193 |
Target: 5'- uUGACgGCGCAAaauACAUCGUGUGAUu -3' miRNA: 3'- cACUG-CGCGUUgc-UGUAGCACGCUGu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 122080 | 0.71 | 0.888029 |
Target: 5'- -cGAUGCccgucuGCAGCGACuuggucUCGUGCGGCu -3' miRNA: 3'- caCUGCG------CGUUGCUGu-----AGCACGCUGu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 235291 | 0.71 | 0.894645 |
Target: 5'- -cGACGCGCcgccaacuggcGACGACAga-UGCGACGg -3' miRNA: 3'- caCUGCGCG-----------UUGCUGUagcACGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 153116 | 0.71 | 0.894645 |
Target: 5'- --cGCGCGCGACGGCAgcagGCGGCu -3' miRNA: 3'- cacUGCGCGUUGCUGUagcaCGCUGu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 85061 | 0.71 | 0.894645 |
Target: 5'- gGUGAUGCGCAGCGugAgcagCGUcucGCGGu- -3' miRNA: 3'- -CACUGCGCGUUGCugUa---GCA---CGCUgu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 128462 | 0.7 | 0.907204 |
Target: 5'- -aGACGcCGCAGCcGCcgCGUGCGuACGg -3' miRNA: 3'- caCUGC-GCGUUGcUGuaGCACGC-UGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 239238 | 0.7 | 0.912559 |
Target: 5'- uGUGGCGCugcacggccgucaGCAGCGACGgcggGUGUGGCGc -3' miRNA: 3'- -CACUGCG-------------CGUUGCUGUag--CACGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 55728 | 0.7 | 0.912559 |
Target: 5'- -cGGCGCGCAGCGccucccaGCGcgCGgGCGGCAg -3' miRNA: 3'- caCUGCGCGUUGC-------UGUa-GCaCGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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