miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 5' -53.4 NC_003521.1 + 175840 0.66 0.989874
Target:  5'- -aGAagcgGCGC-ACGuCGUCGUGCGAg- -3'
miRNA:   3'- caCUg---CGCGuUGCuGUAGCACGCUgu -5'
14387 5' -53.4 NC_003521.1 + 229623 0.66 0.989874
Target:  5'- cGUGAgGCGCGACGGC-UCugaaGACAg -3'
miRNA:   3'- -CACUgCGCGUUGCUGuAGcacgCUGU- -5'
14387 5' -53.4 NC_003521.1 + 76379 0.66 0.989874
Target:  5'- cGUGACG-GCcGCGGCcgCG-GUGGCGc -3'
miRNA:   3'- -CACUGCgCGuUGCUGuaGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 85114 0.66 0.989874
Target:  5'- -cGGCG-GCAGCGGCGg---GCGGCAc -3'
miRNA:   3'- caCUGCgCGUUGCUGUagcaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 136646 0.66 0.989874
Target:  5'- -gGGCGCGgGGCGGCg----GCGACAg -3'
miRNA:   3'- caCUGCGCgUUGCUGuagcaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 45164 0.66 0.989874
Target:  5'- -cGcACGCGUAA-GugGUgGUGCGACu -3'
miRNA:   3'- caC-UGCGCGUUgCugUAgCACGCUGu -5'
14387 5' -53.4 NC_003521.1 + 190165 0.66 0.989874
Target:  5'- cUGACGUuCAAgGACA-CGcGCGACAg -3'
miRNA:   3'- cACUGCGcGUUgCUGUaGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 207931 0.66 0.989874
Target:  5'- -cGGCGgGCAcgGCGGCAgcacCG-GCGGCGc -3'
miRNA:   3'- caCUGCgCGU--UGCUGUa---GCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 171660 0.66 0.989874
Target:  5'- -cGGCGgGCGuCGggaGCGUCG-GCGGCAu -3'
miRNA:   3'- caCUGCgCGUuGC---UGUAGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 198208 0.66 0.988534
Target:  5'- aUGGCG-GCGACGGCGcCGccgGCGGCc -3'
miRNA:   3'- cACUGCgCGUUGCUGUaGCa--CGCUGu -5'
14387 5' -53.4 NC_003521.1 + 135942 0.66 0.988534
Target:  5'- -gGAUGUGCGACG-CcUCGggcgccUGCGACAu -3'
miRNA:   3'- caCUGCGCGUUGCuGuAGC------ACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 83292 0.66 0.988534
Target:  5'- -aGGCGUagGCcAUGuccACAUUGUGCGACAg -3'
miRNA:   3'- caCUGCG--CGuUGC---UGUAGCACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 68522 0.66 0.988534
Target:  5'- cUGGCGC-CAcCGACAcCGgacgGCGGCAg -3'
miRNA:   3'- cACUGCGcGUuGCUGUaGCa---CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 53842 0.66 0.98706
Target:  5'- cUGAcuuucCGCGCGACGGCGUCcucgGcCGGCGu -3'
miRNA:   3'- cACU-----GCGCGUUGCUGUAGca--C-GCUGU- -5'
14387 5' -53.4 NC_003521.1 + 218416 0.66 0.98706
Target:  5'- -cGcCGCGCAgcauggccaGCGACAgCG-GCGGCAc -3'
miRNA:   3'- caCuGCGCGU---------UGCUGUaGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 151439 0.66 0.98706
Target:  5'- cGUGcguacCGUGCGGCGACAggugacgauagCGUGuCGACGu -3'
miRNA:   3'- -CACu----GCGCGUUGCUGUa----------GCAC-GCUGU- -5'
14387 5' -53.4 NC_003521.1 + 151259 0.66 0.98706
Target:  5'- -gGACG-GCGACGACGagGagcGCGACGa -3'
miRNA:   3'- caCUGCgCGUUGCUGUagCa--CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 31700 0.66 0.98706
Target:  5'- -aGugGgGCGGCGGCAgcaUGUGCG-CGu -3'
miRNA:   3'- caCugCgCGUUGCUGUa--GCACGCuGU- -5'
14387 5' -53.4 NC_003521.1 + 199871 0.66 0.98706
Target:  5'- -cGAgGCaaGACGACAUCGUGUucaGAUAa -3'
miRNA:   3'- caCUgCGcgUUGCUGUAGCACG---CUGU- -5'
14387 5' -53.4 NC_003521.1 + 170959 0.66 0.98706
Target:  5'- cGUGGCgcuGCGCGGCGGCcucAUCGgcaGCGuCAu -3'
miRNA:   3'- -CACUG---CGCGUUGCUG---UAGCa--CGCuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.