miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 5' -53.4 NC_003521.1 + 33258 0.66 0.99208
Target:  5'- --cACGCGCAGCaGGCcggcgcgAUCGUGCaGCAg -3'
miRNA:   3'- cacUGCGCGUUG-CUG-------UAGCACGcUGU- -5'
14387 5' -53.4 NC_003521.1 + 34082 0.68 0.97234
Target:  5'- -cGGCG-GCAgucgGCGAUAUCGcGCGAUAg -3'
miRNA:   3'- caCUGCgCGU----UGCUGUAGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 34599 0.66 0.989874
Target:  5'- -aGGCGCGCgcagAugGAC-UCGUGC-ACGg -3'
miRNA:   3'- caCUGCGCG----UugCUGuAGCACGcUGU- -5'
14387 5' -53.4 NC_003521.1 + 36254 0.69 0.948225
Target:  5'- -cGGCGCGCGACGugGuggauUCGUG-GAUc -3'
miRNA:   3'- caCUGCGCGUUGCugU-----AGCACgCUGu -5'
14387 5' -53.4 NC_003521.1 + 36731 0.66 0.992185
Target:  5'- aGUGGCGCcaccagguGCAcguggcccACGACGUgugGUGCGACu -3'
miRNA:   3'- -CACUGCG--------CGU--------UGCUGUAg--CACGCUGu -5'
14387 5' -53.4 NC_003521.1 + 36979 0.66 0.992185
Target:  5'- gGUGcuCG-GCGGCGACAUCc-GCGACGa -3'
miRNA:   3'- -CACu-GCgCGUUGCUGUAGcaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 39010 0.7 0.912559
Target:  5'- uGUGGCGCugcacggccgucaGCAGCGACGgcggGUGUGGCGc -3'
miRNA:   3'- -CACUGCG-------------CGUUGCUGUag--CACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 39186 0.75 0.688049
Target:  5'- cUGACGCGCGACGACGaCGgucgGgGACc -3'
miRNA:   3'- cACUGCGCGUUGCUGUaGCa---CgCUGu -5'
14387 5' -53.4 NC_003521.1 + 42560 0.67 0.979668
Target:  5'- gGUGcCGCuGgGACGGCuAUCGcUGCGGCGu -3'
miRNA:   3'- -CACuGCG-CgUUGCUG-UAGC-ACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 43609 0.66 0.990374
Target:  5'- -cGACgaGCGCGACGACAaCGaggacgaggaggagGCGGCGg -3'
miRNA:   3'- caCUG--CGCGUUGCUGUaGCa-------------CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 45164 0.66 0.989874
Target:  5'- -cGcACGCGUAA-GugGUgGUGCGACu -3'
miRNA:   3'- caC-UGCGCGUUgCugUAgCACGCUGu -5'
14387 5' -53.4 NC_003521.1 + 46635 0.67 0.979668
Target:  5'- -aGGCG-GUAGaCGGCGUCG-GCGGCGg -3'
miRNA:   3'- caCUGCgCGUU-GCUGUAGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 47481 0.68 0.97234
Target:  5'- -aGACGaGCGGCGACAUgGgaacgaagGCGACc -3'
miRNA:   3'- caCUGCgCGUUGCUGUAgCa-------CGCUGu -5'
14387 5' -53.4 NC_003521.1 + 47718 0.67 0.985444
Target:  5'- uUGACGUcaGACGGCAUUGU-CGACGc -3'
miRNA:   3'- cACUGCGcgUUGCUGUAGCAcGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 50770 0.67 0.981756
Target:  5'- cGUGAagacCGCGCGGCGGuCcugGUCGaucgGCGACGg -3'
miRNA:   3'- -CACU----GCGCGUUGCU-G---UAGCa---CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 53170 0.67 0.985444
Target:  5'- -cGGCG-GCGAgGAgGUCG-GCGACGc -3'
miRNA:   3'- caCUGCgCGUUgCUgUAGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 53842 0.66 0.98706
Target:  5'- cUGAcuuucCGCGCGACGGCGUCcucgGcCGGCGu -3'
miRNA:   3'- cACU-----GCGCGUUGCUGUAGca--C-GCUGU- -5'
14387 5' -53.4 NC_003521.1 + 55011 0.67 0.983679
Target:  5'- -gGGCuuaagGCGCAGCGccaGCGUCG-GCGGCu -3'
miRNA:   3'- caCUG-----CGCGUUGC---UGUAGCaCGCUGu -5'
14387 5' -53.4 NC_003521.1 + 55728 0.7 0.912559
Target:  5'- -cGGCGCGCAGCGccucccaGCGcgCGgGCGGCAg -3'
miRNA:   3'- caCUGCGCGUUGC-------UGUa-GCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 57376 0.7 0.929568
Target:  5'- cGUGACGCGCcAgGGCGUCGaucucGCGcCAc -3'
miRNA:   3'- -CACUGCGCGuUgCUGUAGCa----CGCuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.