miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 5' -53.4 NC_003521.1 + 194118 0.68 0.963275
Target:  5'- -cGAa-CGCAGgGAguuCAUCGUGCGGCAg -3'
miRNA:   3'- caCUgcGCGUUgCU---GUAGCACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 192310 0.7 0.913142
Target:  5'- ---cCGCgGUAGCGGCGUCG-GCGGCAc -3'
miRNA:   3'- cacuGCG-CGUUGCUGUAGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 192043 0.67 0.974967
Target:  5'- -cGGCGUGCGcggcagacGCGGCGUCc-GCGGCGg -3'
miRNA:   3'- caCUGCGCGU--------UGCUGUAGcaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 191056 0.67 0.979008
Target:  5'- -cGACGCucaguucuguucccGCGGCGACcgUGgugGCGGCGg -3'
miRNA:   3'- caCUGCG--------------CGUUGCUGuaGCa--CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 190535 0.66 0.989874
Target:  5'- -cGAgGUGCGGCGGCAgca-GCGGCGg -3'
miRNA:   3'- caCUgCGCGUUGCUGUagcaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 190165 0.66 0.989874
Target:  5'- cUGACGUuCAAgGACA-CGcGCGACAg -3'
miRNA:   3'- cACUGCGcGUUgCUGUaGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 189352 0.71 0.881193
Target:  5'- uUGACgGCGCAAaauACAUCGUGUGAUu -3'
miRNA:   3'- cACUG-CGCGUUgc-UGUAGCACGCUGu -5'
14387 5' -53.4 NC_003521.1 + 187276 0.66 0.991088
Target:  5'- -aGACGCGaCAGCGGCAccUCGacccggaGCgGACAg -3'
miRNA:   3'- caCUGCGC-GUUGCUGU--AGCa------CG-CUGU- -5'
14387 5' -53.4 NC_003521.1 + 186757 0.7 0.929568
Target:  5'- cUGGgGCuCGGCGGCAUCGgcggagGCGGCGg -3'
miRNA:   3'- cACUgCGcGUUGCUGUAGCa-----CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 186637 0.74 0.737156
Target:  5'- gGUGGCG-GCAAguCGACGUCGcGCGGCGg -3'
miRNA:   3'- -CACUGCgCGUU--GCUGUAGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 186164 0.67 0.979668
Target:  5'- --uGCGUGCAcggccAgGACAUCGUGCG-CGa -3'
miRNA:   3'- cacUGCGCGU-----UgCUGUAGCACGCuGU- -5'
14387 5' -53.4 NC_003521.1 + 184604 0.68 0.97234
Target:  5'- -cGGCGCGCAuACagUAUCGUGCGuGCGg -3'
miRNA:   3'- caCUGCGCGU-UGcuGUAGCACGC-UGU- -5'
14387 5' -53.4 NC_003521.1 + 184103 0.74 0.756238
Target:  5'- cGUGACGCGgcuCGACGUCGacGCGACc -3'
miRNA:   3'- -CACUGCGCguuGCUGUAGCa-CGCUGu -5'
14387 5' -53.4 NC_003521.1 + 180637 0.66 0.992185
Target:  5'- -cGGCGCGCGuucucacgccGCGGC-UCGcuaccgggGCGACGa -3'
miRNA:   3'- caCUGCGCGU----------UGCUGuAGCa-------CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 180105 0.72 0.835841
Target:  5'- -gGAgG-GCAGCGGCGUgGUGCGACc -3'
miRNA:   3'- caCUgCgCGUUGCUGUAgCACGCUGu -5'
14387 5' -53.4 NC_003521.1 + 176292 0.7 0.929568
Target:  5'- -aGACGgGCGuCGGCGUCGUcGCG-CAa -3'
miRNA:   3'- caCUGCgCGUuGCUGUAGCA-CGCuGU- -5'
14387 5' -53.4 NC_003521.1 + 175840 0.66 0.989874
Target:  5'- -aGAagcgGCGC-ACGuCGUCGUGCGAg- -3'
miRNA:   3'- caCUg---CGCGuUGCuGUAGCACGCUgu -5'
14387 5' -53.4 NC_003521.1 + 175437 0.69 0.939358
Target:  5'- aGUGGCGUGCu-CGGCGUaCGaucgGCGGCGc -3'
miRNA:   3'- -CACUGCGCGuuGCUGUA-GCa---CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 174176 0.67 0.985444
Target:  5'- -aGGcCGCGCAcgaagguCGACAg-GUGCGACGc -3'
miRNA:   3'- caCU-GCGCGUu------GCUGUagCACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 171660 0.66 0.989874
Target:  5'- -cGGCGgGCGuCGggaGCGUCG-GCGGCAu -3'
miRNA:   3'- caCUGCgCGUuGC---UGUAGCaCGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.