miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 5' -53.4 NC_003521.1 + 239238 0.7 0.912559
Target:  5'- uGUGGCGCugcacggccgucaGCAGCGACGgcggGUGUGGCGc -3'
miRNA:   3'- -CACUGCG-------------CGUUGCUGUag--CACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 235291 0.71 0.894645
Target:  5'- -cGACGCGCcgccaacuggcGACGACAga-UGCGACGg -3'
miRNA:   3'- caCUGCGCG-----------UUGCUGUagcACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 234845 0.67 0.977408
Target:  5'- -cGGCGauaGCGugGGCAUCG-GCGuCGu -3'
miRNA:   3'- caCUGCg--CGUugCUGUAGCaCGCuGU- -5'
14387 5' -53.4 NC_003521.1 + 229623 0.66 0.989874
Target:  5'- cGUGAgGCGCGACGGC-UCugaaGACAg -3'
miRNA:   3'- -CACUgCGCGUUGCUGuAGcacgCUGU- -5'
14387 5' -53.4 NC_003521.1 + 225846 0.7 0.924325
Target:  5'- -cGGCGCGCu-CGugGUgGUGCgGGCAc -3'
miRNA:   3'- caCUGCGCGuuGCugUAgCACG-CUGU- -5'
14387 5' -53.4 NC_003521.1 + 224806 0.7 0.929568
Target:  5'- -gGACGCGCGugGcguaggGCGUC-UGCGGCu -3'
miRNA:   3'- caCUGCGCGUugC------UGUAGcACGCUGu -5'
14387 5' -53.4 NC_003521.1 + 221909 0.67 0.981756
Target:  5'- -cGGCGCGCGGCGcCAcccuUCGgggcugccGCGGCGc -3'
miRNA:   3'- caCUGCGCGUUGCuGU----AGCa-------CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 221360 0.68 0.9665
Target:  5'- cUGGcCGCGCAGCGACAUgGUcccGCcGCGc -3'
miRNA:   3'- cACU-GCGCGUUGCUGUAgCA---CGcUGU- -5'
14387 5' -53.4 NC_003521.1 + 218416 0.66 0.98706
Target:  5'- -cGcCGCGCAgcauggccaGCGACAgCG-GCGGCAc -3'
miRNA:   3'- caCuGCGCGU---------UGCUGUaGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 216827 0.68 0.959839
Target:  5'- aUGGCGCGCAG-GAgGUCGcagcccGCGGCGg -3'
miRNA:   3'- cACUGCGCGUUgCUgUAGCa-----CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 213115 0.72 0.843888
Target:  5'- -cGACGCGCugggugUGGCGUgGUGCGGCc -3'
miRNA:   3'- caCUGCGCGuu----GCUGUAgCACGCUGu -5'
14387 5' -53.4 NC_003521.1 + 210653 0.66 0.991088
Target:  5'- --cGCGCGCucauGCGACAaCGcGUGACGc -3'
miRNA:   3'- cacUGCGCGu---UGCUGUaGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 210413 0.73 0.793054
Target:  5'- -gGAC-CGCAGCGugGUCGgcguggGCGGCGa -3'
miRNA:   3'- caCUGcGCGUUGCugUAGCa-----CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 207931 0.66 0.989874
Target:  5'- -cGGCGgGCAcgGCGGCAgcacCG-GCGGCGc -3'
miRNA:   3'- caCUGCgCGU--UGCUGUa---GCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 201543 0.69 0.948225
Target:  5'- -cGGCGC-CGGCGACGUgGcGCGGCu -3'
miRNA:   3'- caCUGCGcGUUGCUGUAgCaCGCUGu -5'
14387 5' -53.4 NC_003521.1 + 199871 0.66 0.98706
Target:  5'- -cGAgGCaaGACGACAUCGUGUucaGAUAa -3'
miRNA:   3'- caCUgCGcgUUGCUGUAGCACG---CUGU- -5'
14387 5' -53.4 NC_003521.1 + 199488 0.68 0.959839
Target:  5'- aUGACGCGaUAGCGA--UCG-GCGGCGa -3'
miRNA:   3'- cACUGCGC-GUUGCUguAGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 198255 0.72 0.866881
Target:  5'- cUGACGcCGCAGCGAUAgcCGUcccaGCGGCAc -3'
miRNA:   3'- cACUGC-GCGUUGCUGUa-GCA----CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 198208 0.66 0.988534
Target:  5'- aUGGCG-GCGACGGCGcCGccgGCGGCc -3'
miRNA:   3'- cACUGCgCGUUGCUGUaGCa--CGCUGu -5'
14387 5' -53.4 NC_003521.1 + 197648 0.66 0.992185
Target:  5'- ----gGuCGCggUGGCGcUCGUGCGGCAg -3'
miRNA:   3'- cacugC-GCGuuGCUGU-AGCACGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.