miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 5' -53.4 NC_003521.1 + 192310 0.7 0.913142
Target:  5'- ---cCGCgGUAGCGGCGUCG-GCGGCAc -3'
miRNA:   3'- cacuGCG-CGUUGCUGUAGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 143810 0.71 0.881193
Target:  5'- cGUGAaccCGCGCAaccccaGCGAgAUCGUGCG-CGc -3'
miRNA:   3'- -CACU---GCGCGU------UGCUgUAGCACGCuGU- -5'
14387 5' -53.4 NC_003521.1 + 122080 0.71 0.888029
Target:  5'- -cGAUGCccgucuGCAGCGACuuggucUCGUGCGGCu -3'
miRNA:   3'- caCUGCG------CGUUGCUGu-----AGCACGCUGu -5'
14387 5' -53.4 NC_003521.1 + 153116 0.71 0.894645
Target:  5'- --cGCGCGCGACGGCAgcagGCGGCu -3'
miRNA:   3'- cacUGCGCGUUGCUGUagcaCGCUGu -5'
14387 5' -53.4 NC_003521.1 + 235291 0.71 0.894645
Target:  5'- -cGACGCGCcgccaacuggcGACGACAga-UGCGACGg -3'
miRNA:   3'- caCUGCGCG-----------UUGCUGUagcACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 55728 0.7 0.912559
Target:  5'- -cGGCGCGCAGCGccucccaGCGcgCGgGCGGCAg -3'
miRNA:   3'- caCUGCGCGUUGC-------UGUa-GCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 239238 0.7 0.912559
Target:  5'- uGUGGCGCugcacggccgucaGCAGCGACGgcggGUGUGGCGc -3'
miRNA:   3'- -CACUGCG-------------CGUUGCUGUag--CACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 76062 0.7 0.913142
Target:  5'- -aGACGCuuGAUGACGgcgaUGUGCGGCAg -3'
miRNA:   3'- caCUGCGcgUUGCUGUa---GCACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 88510 0.7 0.913142
Target:  5'- --cACGCGCAGCGACucgcagcCGUGCaGGCGc -3'
miRNA:   3'- cacUGCGCGUUGCUGua-----GCACG-CUGU- -5'
14387 5' -53.4 NC_003521.1 + 189352 0.71 0.881193
Target:  5'- uUGACgGCGCAAaauACAUCGUGUGAUu -3'
miRNA:   3'- cACUG-CGCGUUgc-UGUAGCACGCUGu -5'
14387 5' -53.4 NC_003521.1 + 102790 0.71 0.874142
Target:  5'- aUGACGCGcCGGCGGCcgccagcUCGgGCGGCAg -3'
miRNA:   3'- cACUGCGC-GUUGCUGu------AGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 198255 0.72 0.866881
Target:  5'- cUGACGcCGCAGCGAUAgcCGUcccaGCGGCAc -3'
miRNA:   3'- cACUGC-GCGUUGCUGUa-GCA----CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 66223 0.77 0.577445
Target:  5'- cGUGACGCGUAACGugAaCGUaaacGCGGCGu -3'
miRNA:   3'- -CACUGCGCGUUGCugUaGCA----CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 135487 0.77 0.581443
Target:  5'- aGUGGCGCGCAcauaaaaccgaaagcGgCGACGUCGcGCGGCGu -3'
miRNA:   3'- -CACUGCGCGU---------------U-GCUGUAGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 39186 0.75 0.688049
Target:  5'- cUGACGCGCGACGACGaCGgucgGgGACc -3'
miRNA:   3'- cACUGCGCGUUGCUGUaGCa---CgCUGu -5'
14387 5' -53.4 NC_003521.1 + 168364 0.74 0.756238
Target:  5'- -cGGCGCGUAGCGGCAgUCG-GCgGGCAg -3'
miRNA:   3'- caCUGCGCGUUGCUGU-AGCaCG-CUGU- -5'
14387 5' -53.4 NC_003521.1 + 66376 0.73 0.810649
Target:  5'- -cGGCGaGCAGCGACAccagcgCGUGCGugAa -3'
miRNA:   3'- caCUGCgCGUUGCUGUa-----GCACGCugU- -5'
14387 5' -53.4 NC_003521.1 + 107511 0.72 0.843888
Target:  5'- aUGGCGUGUAugGugGUUGUaGUGACGu -3'
miRNA:   3'- cACUGCGCGUugCugUAGCA-CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 213115 0.72 0.843888
Target:  5'- -cGACGCGCugggugUGGCGUgGUGCGGCc -3'
miRNA:   3'- caCUGCGCGuu----GCUGUAgCACGCUGu -5'
14387 5' -53.4 NC_003521.1 + 32380 0.72 0.851748
Target:  5'- -gGugGCGCGugGcCAgguccucgggCGUGCGACAc -3'
miRNA:   3'- caCugCGCGUugCuGUa---------GCACGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.