miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 5' -53.4 NC_003521.1 + 98354 0.66 0.991088
Target:  5'- cUGACaGCGCAugACGACGgauUCGgGCGAa- -3'
miRNA:   3'- cACUG-CGCGU--UGCUGU---AGCaCGCUgu -5'
14387 5' -53.4 NC_003521.1 + 180637 0.66 0.992185
Target:  5'- -cGGCGCGCGuucucacgccGCGGC-UCGcuaccgggGCGACGa -3'
miRNA:   3'- caCUGCGCGU----------UGCUGuAGCa-------CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 74350 0.66 0.992185
Target:  5'- aUGGCGCuGCugcGCGGCuacggccaGUGCGGCGa -3'
miRNA:   3'- cACUGCG-CGu--UGCUGuag-----CACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 218416 0.66 0.98706
Target:  5'- -cGcCGCGCAgcauggccaGCGACAgCG-GCGGCAc -3'
miRNA:   3'- caCuGCGCGU---------UGCUGUaGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 198208 0.66 0.988534
Target:  5'- aUGGCG-GCGACGGCGcCGccgGCGGCc -3'
miRNA:   3'- cACUGCgCGUUGCUGUaGCa--CGCUGu -5'
14387 5' -53.4 NC_003521.1 + 33258 0.66 0.99208
Target:  5'- --cACGCGCAGCaGGCcggcgcgAUCGUGCaGCAg -3'
miRNA:   3'- cacUGCGCGUUG-CUG-------UAGCACGcUGU- -5'
14387 5' -53.4 NC_003521.1 + 151439 0.66 0.98706
Target:  5'- cGUGcguacCGUGCGGCGACAggugacgauagCGUGuCGACGu -3'
miRNA:   3'- -CACu----GCGCGUUGCUGUa----------GCAC-GCUGU- -5'
14387 5' -53.4 NC_003521.1 + 116079 0.66 0.99208
Target:  5'- -aGGCGCagcgaguGCAGCGGCugucCGcGCGACAu -3'
miRNA:   3'- caCUGCG-------CGUUGCUGua--GCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 127368 0.66 0.991088
Target:  5'- -cGugGUGC-GCGGCAg-GUGCGugAu -3'
miRNA:   3'- caCugCGCGuUGCUGUagCACGCugU- -5'
14387 5' -53.4 NC_003521.1 + 68522 0.66 0.988534
Target:  5'- cUGGCGC-CAcCGACAcCGgacgGCGGCAg -3'
miRNA:   3'- cACUGCGcGUuGCUGUaGCa---CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 151307 0.66 0.992185
Target:  5'- -cGACGCGCGcaagGCGGCcaggCGgGUGGCGu -3'
miRNA:   3'- caCUGCGCGU----UGCUGua--GCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 199871 0.66 0.98706
Target:  5'- -cGAgGCaaGACGACAUCGUGUucaGAUAa -3'
miRNA:   3'- caCUgCGcgUUGCUGUAGCACG---CUGU- -5'
14387 5' -53.4 NC_003521.1 + 53842 0.66 0.98706
Target:  5'- cUGAcuuucCGCGCGACGGCGUCcucgGcCGGCGu -3'
miRNA:   3'- cACU-----GCGCGUUGCUGUAGca--C-GCUGU- -5'
14387 5' -53.4 NC_003521.1 + 34599 0.66 0.989874
Target:  5'- -aGGCGCGCgcagAugGAC-UCGUGC-ACGg -3'
miRNA:   3'- caCUGCGCG----UugCUGuAGCACGcUGU- -5'
14387 5' -53.4 NC_003521.1 + 83292 0.66 0.988534
Target:  5'- -aGGCGUagGCcAUGuccACAUUGUGCGACAg -3'
miRNA:   3'- caCUGCG--CGuUGC---UGUAGCACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 135942 0.66 0.988534
Target:  5'- -gGAUGUGCGACG-CcUCGggcgccUGCGACAu -3'
miRNA:   3'- caCUGCGCGUUGCuGuAGC------ACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 43609 0.66 0.990374
Target:  5'- -cGACgaGCGCGACGACAaCGaggacgaggaggagGCGGCGg -3'
miRNA:   3'- caCUG--CGCGUUGCUGUaGCa-------------CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 151259 0.66 0.98706
Target:  5'- -gGACG-GCGACGACGagGagcGCGACGa -3'
miRNA:   3'- caCUGCgCGUUGCUGUagCa--CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 170959 0.66 0.98706
Target:  5'- cGUGGCgcuGCGCGGCGGCcucAUCGgcaGCGuCAu -3'
miRNA:   3'- -CACUG---CGCGUUGCUG---UAGCa--CGCuGU- -5'
14387 5' -53.4 NC_003521.1 + 168984 0.66 0.991088
Target:  5'- -cGACGCGCGucggucGCGGgAggCGgGCGACGg -3'
miRNA:   3'- caCUGCGCGU------UGCUgUa-GCaCGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.