miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 5' -53.4 NC_003521.1 + 1315 0.69 0.948225
Target:  5'- -cGGCGC-CGGCGACGUgGcGCGGCu -3'
miRNA:   3'- caCUGCGcGUUGCUGUAgCaCGCUGu -5'
14387 5' -53.4 NC_003521.1 + 6391 0.67 0.977408
Target:  5'- -gGGCGcCGCAGCuACcgCGgcgGCGACGg -3'
miRNA:   3'- caCUGC-GCGUUGcUGuaGCa--CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 7436 0.67 0.981756
Target:  5'- -aGACG-GCAGCGGCAgcucCGgaucccgGCGACGc -3'
miRNA:   3'- caCUGCgCGUUGCUGUa---GCa------CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 7740 0.69 0.948225
Target:  5'- -cGGCGCG-AGCGGCGgaggCG-GCGGCAg -3'
miRNA:   3'- caCUGCGCgUUGCUGUa---GCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 15201 0.67 0.979668
Target:  5'- -cGugGUGgAuccCGACAUCGUGgGGCu -3'
miRNA:   3'- caCugCGCgUu--GCUGUAGCACgCUGu -5'
14387 5' -53.4 NC_003521.1 + 15308 0.74 0.765624
Target:  5'- -cGACGCGCGACGGCGcCGaGCGGg- -3'
miRNA:   3'- caCUGCGCGUUGCUGUaGCaCGCUgu -5'
14387 5' -53.4 NC_003521.1 + 16031 0.68 0.959839
Target:  5'- --cACGCGCGucccgcACGACGUgGUGCGGg- -3'
miRNA:   3'- cacUGCGCGU------UGCUGUAgCACGCUgu -5'
14387 5' -53.4 NC_003521.1 + 16718 0.82 0.367655
Target:  5'- cGUGAUGCGCGGCGAguUCG-GCGACc -3'
miRNA:   3'- -CACUGCGCGUUGCUguAGCaCGCUGu -5'
14387 5' -53.4 NC_003521.1 + 18442 0.66 0.992185
Target:  5'- -aGACGCGCGGCcugugccgcuucGACcgCGggcugcGCGGCGa -3'
miRNA:   3'- caCUGCGCGUUG------------CUGuaGCa-----CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 18719 0.69 0.943906
Target:  5'- cUGugGCugccgcugGCGGCGGCgAUCGUgGCGGCGg -3'
miRNA:   3'- cACugCG--------CGUUGCUG-UAGCA-CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 18754 0.68 0.97234
Target:  5'- gGUGGCGC-CGACGG-GUCGcugcUGCGACGg -3'
miRNA:   3'- -CACUGCGcGUUGCUgUAGC----ACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 19020 0.67 0.981756
Target:  5'- uGUGACGUGCca-GAUAUCGaGCgGACGc -3'
miRNA:   3'- -CACUGCGCGuugCUGUAGCaCG-CUGU- -5'
14387 5' -53.4 NC_003521.1 + 19185 0.67 0.974713
Target:  5'- -cGACGUGCAcgaGCuGCAgaagacggaucgcUCGUGCGACc -3'
miRNA:   3'- caCUGCGCGU---UGcUGU-------------AGCACGCUGu -5'
14387 5' -53.4 NC_003521.1 + 20170 0.72 0.843888
Target:  5'- -cGACG-GCGACGACGguccgCGUcGCGACGu -3'
miRNA:   3'- caCUGCgCGUUGCUGUa----GCA-CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 20717 0.67 0.985444
Target:  5'- cUGGCGCGUGACGugAugaUCGUcaGCGGa- -3'
miRNA:   3'- cACUGCGCGUUGCugU---AGCA--CGCUgu -5'
14387 5' -53.4 NC_003521.1 + 25637 0.73 0.78404
Target:  5'- cUGGCGCGUGaccACGACAUCaG-GCGGCAg -3'
miRNA:   3'- cACUGCGCGU---UGCUGUAG-CaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 26548 0.68 0.97234
Target:  5'- -cGACGCuuuaugccaGCGACGGCGUCaggGCGAUu -3'
miRNA:   3'- caCUGCG---------CGUUGCUGUAGca-CGCUGu -5'
14387 5' -53.4 NC_003521.1 + 27350 0.72 0.843888
Target:  5'- aUGGCGUGCAcCGGCGccgucaugaCGUGCGACGc -3'
miRNA:   3'- cACUGCGCGUuGCUGUa--------GCACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 31700 0.66 0.98706
Target:  5'- -aGugGgGCGGCGGCAgcaUGUGCG-CGu -3'
miRNA:   3'- caCugCgCGUUGCUGUa--GCACGCuGU- -5'
14387 5' -53.4 NC_003521.1 + 32380 0.72 0.851748
Target:  5'- -gGugGCGCGugGcCAgguccucgggCGUGCGACAc -3'
miRNA:   3'- caCugCGCGUugCuGUa---------GCACGCUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.