Results 1 - 20 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14387 | 5' | -53.4 | NC_003521.1 | + | 1315 | 0.69 | 0.948225 |
Target: 5'- -cGGCGC-CGGCGACGUgGcGCGGCu -3' miRNA: 3'- caCUGCGcGUUGCUGUAgCaCGCUGu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 6391 | 0.67 | 0.977408 |
Target: 5'- -gGGCGcCGCAGCuACcgCGgcgGCGACGg -3' miRNA: 3'- caCUGC-GCGUUGcUGuaGCa--CGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 7436 | 0.67 | 0.981756 |
Target: 5'- -aGACG-GCAGCGGCAgcucCGgaucccgGCGACGc -3' miRNA: 3'- caCUGCgCGUUGCUGUa---GCa------CGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 7740 | 0.69 | 0.948225 |
Target: 5'- -cGGCGCG-AGCGGCGgaggCG-GCGGCAg -3' miRNA: 3'- caCUGCGCgUUGCUGUa---GCaCGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 15201 | 0.67 | 0.979668 |
Target: 5'- -cGugGUGgAuccCGACAUCGUGgGGCu -3' miRNA: 3'- caCugCGCgUu--GCUGUAGCACgCUGu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 15308 | 0.74 | 0.765624 |
Target: 5'- -cGACGCGCGACGGCGcCGaGCGGg- -3' miRNA: 3'- caCUGCGCGUUGCUGUaGCaCGCUgu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 16031 | 0.68 | 0.959839 |
Target: 5'- --cACGCGCGucccgcACGACGUgGUGCGGg- -3' miRNA: 3'- cacUGCGCGU------UGCUGUAgCACGCUgu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 16718 | 0.82 | 0.367655 |
Target: 5'- cGUGAUGCGCGGCGAguUCG-GCGACc -3' miRNA: 3'- -CACUGCGCGUUGCUguAGCaCGCUGu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 18442 | 0.66 | 0.992185 |
Target: 5'- -aGACGCGCGGCcugugccgcuucGACcgCGggcugcGCGGCGa -3' miRNA: 3'- caCUGCGCGUUG------------CUGuaGCa-----CGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 18719 | 0.69 | 0.943906 |
Target: 5'- cUGugGCugccgcugGCGGCGGCgAUCGUgGCGGCGg -3' miRNA: 3'- cACugCG--------CGUUGCUG-UAGCA-CGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 18754 | 0.68 | 0.97234 |
Target: 5'- gGUGGCGC-CGACGG-GUCGcugcUGCGACGg -3' miRNA: 3'- -CACUGCGcGUUGCUgUAGC----ACGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 19020 | 0.67 | 0.981756 |
Target: 5'- uGUGACGUGCca-GAUAUCGaGCgGACGc -3' miRNA: 3'- -CACUGCGCGuugCUGUAGCaCG-CUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 19185 | 0.67 | 0.974713 |
Target: 5'- -cGACGUGCAcgaGCuGCAgaagacggaucgcUCGUGCGACc -3' miRNA: 3'- caCUGCGCGU---UGcUGU-------------AGCACGCUGu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 20170 | 0.72 | 0.843888 |
Target: 5'- -cGACG-GCGACGACGguccgCGUcGCGACGu -3' miRNA: 3'- caCUGCgCGUUGCUGUa----GCA-CGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 20717 | 0.67 | 0.985444 |
Target: 5'- cUGGCGCGUGACGugAugaUCGUcaGCGGa- -3' miRNA: 3'- cACUGCGCGUUGCugU---AGCA--CGCUgu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 25637 | 0.73 | 0.78404 |
Target: 5'- cUGGCGCGUGaccACGACAUCaG-GCGGCAg -3' miRNA: 3'- cACUGCGCGU---UGCUGUAG-CaCGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 26548 | 0.68 | 0.97234 |
Target: 5'- -cGACGCuuuaugccaGCGACGGCGUCaggGCGAUu -3' miRNA: 3'- caCUGCG---------CGUUGCUGUAGca-CGCUGu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 27350 | 0.72 | 0.843888 |
Target: 5'- aUGGCGUGCAcCGGCGccgucaugaCGUGCGACGc -3' miRNA: 3'- cACUGCGCGUuGCUGUa--------GCACGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 31700 | 0.66 | 0.98706 |
Target: 5'- -aGugGgGCGGCGGCAgcaUGUGCG-CGu -3' miRNA: 3'- caCugCgCGUUGCUGUa--GCACGCuGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 32380 | 0.72 | 0.851748 |
Target: 5'- -gGugGCGCGugGcCAgguccucgggCGUGCGACAc -3' miRNA: 3'- caCugCGCGUugCuGUa---------GCACGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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