miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 5' -53.4 NC_003521.1 + 60752 1.09 0.008779
Target:  5'- gGUGACGCGCAACGACAUCGUGCGACAg -3'
miRNA:   3'- -CACUGCGCGUUGCUGUAGCACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 16718 0.82 0.367655
Target:  5'- cGUGAUGCGCGGCGAguUCG-GCGACc -3'
miRNA:   3'- -CACUGCGCGUUGCUguAGCaCGCUGu -5'
14387 5' -53.4 NC_003521.1 + 66223 0.77 0.577445
Target:  5'- cGUGACGCGUAACGugAaCGUaaacGCGGCGu -3'
miRNA:   3'- -CACUGCGCGUUGCugUaGCA----CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 135487 0.77 0.581443
Target:  5'- aGUGGCGCGCAcauaaaaccgaaagcGgCGACGUCGcGCGGCGu -3'
miRNA:   3'- -CACUGCGCGU---------------U-GCUGUAGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 109866 0.75 0.685056
Target:  5'- cGUGACGgGCGGCGGCGgggccaccaguaacUgCGUGCGACc -3'
miRNA:   3'- -CACUGCgCGUUGCUGU--------------A-GCACGCUGu -5'
14387 5' -53.4 NC_003521.1 + 39186 0.75 0.688049
Target:  5'- cUGACGCGCGACGACGaCGgucgGgGACc -3'
miRNA:   3'- cACUGCGCGUUGCUGUaGCa---CgCUGu -5'
14387 5' -53.4 NC_003521.1 + 186637 0.74 0.737156
Target:  5'- gGUGGCG-GCAAguCGACGUCGcGCGGCGg -3'
miRNA:   3'- -CACUGCgCGUU--GCUGUAGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 168364 0.74 0.756238
Target:  5'- -cGGCGCGUAGCGGCAgUCG-GCgGGCAg -3'
miRNA:   3'- caCUGCGCGUUGCUGU-AGCaCG-CUGU- -5'
14387 5' -53.4 NC_003521.1 + 184103 0.74 0.756238
Target:  5'- cGUGACGCGgcuCGACGUCGacGCGACc -3'
miRNA:   3'- -CACUGCGCguuGCUGUAGCa-CGCUGu -5'
14387 5' -53.4 NC_003521.1 + 15308 0.74 0.765624
Target:  5'- -cGACGCGCGACGGCGcCGaGCGGg- -3'
miRNA:   3'- caCUGCGCGUUGCUGUaGCaCGCUgu -5'
14387 5' -53.4 NC_003521.1 + 89924 0.74 0.774894
Target:  5'- -gGGCGCGCAgucgAUGACGccggCGUGCGGCc -3'
miRNA:   3'- caCUGCGCGU----UGCUGUa---GCACGCUGu -5'
14387 5' -53.4 NC_003521.1 + 131626 0.73 0.783132
Target:  5'- cUGACGCGCAacaugcacaccacGCGACccAUCGUGgCGGCc -3'
miRNA:   3'- cACUGCGCGU-------------UGCUG--UAGCAC-GCUGu -5'
14387 5' -53.4 NC_003521.1 + 25637 0.73 0.78404
Target:  5'- cUGGCGCGUGaccACGACAUCaG-GCGGCAg -3'
miRNA:   3'- cACUGCGCGU---UGCUGUAG-CaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 210413 0.73 0.793054
Target:  5'- -gGAC-CGCAGCGugGUCGgcguggGCGGCGa -3'
miRNA:   3'- caCUGcGCGUUGCugUAGCa-----CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 156159 0.73 0.801926
Target:  5'- cUGGCGCuGCuGCGACGccUGUGCGGCAu -3'
miRNA:   3'- cACUGCG-CGuUGCUGUa-GCACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 66376 0.73 0.810649
Target:  5'- -cGGCGaGCAGCGACAccagcgCGUGCGugAa -3'
miRNA:   3'- caCUGCgCGUUGCUGUa-----GCACGCugU- -5'
14387 5' -53.4 NC_003521.1 + 152406 0.73 0.819214
Target:  5'- -aGACGCGCAGCGcCuUCGUGCa--- -3'
miRNA:   3'- caCUGCGCGUUGCuGuAGCACGcugu -5'
14387 5' -53.4 NC_003521.1 + 91332 0.72 0.835841
Target:  5'- -aGuCGCGCAGCGGCGUCuGUcCGGCGa -3'
miRNA:   3'- caCuGCGCGUUGCUGUAG-CAcGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 140553 0.72 0.835841
Target:  5'- gGUGGCuGCuGCGGCGGCggCG-GCGACAg -3'
miRNA:   3'- -CACUG-CG-CGUUGCUGuaGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 180105 0.72 0.835841
Target:  5'- -gGAgG-GCAGCGGCGUgGUGCGACc -3'
miRNA:   3'- caCUgCgCGUUGCUGUAgCACGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.