miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 5' -53.4 NC_003521.1 + 60752 1.09 0.008779
Target:  5'- gGUGACGCGCAACGACAUCGUGCGACAg -3'
miRNA:   3'- -CACUGCGCGUUGCUGUAGCACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 64606 0.69 0.956189
Target:  5'- cUGGCGCGgGACGACAcgcuUCG-GCcGCAg -3'
miRNA:   3'- cACUGCGCgUUGCUGU----AGCaCGcUGU- -5'
14387 5' -53.4 NC_003521.1 + 66223 0.77 0.577445
Target:  5'- cGUGACGCGUAACGugAaCGUaaacGCGGCGu -3'
miRNA:   3'- -CACUGCGCGUUGCugUaGCA----CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 66376 0.73 0.810649
Target:  5'- -cGGCGaGCAGCGACAccagcgCGUGCGugAa -3'
miRNA:   3'- caCUGCgCGUUGCUGUa-----GCACGCugU- -5'
14387 5' -53.4 NC_003521.1 + 66569 0.68 0.963275
Target:  5'- cUGGCGCGcCAGCG-CAaCGUGCGuCu -3'
miRNA:   3'- cACUGCGC-GUUGCuGUaGCACGCuGu -5'
14387 5' -53.4 NC_003521.1 + 68522 0.66 0.988534
Target:  5'- cUGGCGC-CAcCGACAcCGgacgGCGGCAg -3'
miRNA:   3'- cACUGCGcGUuGCUGUaGCa---CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 69188 0.67 0.983679
Target:  5'- -cGGcCGCGCuagacauaccCGACGUCG-GCGGCAc -3'
miRNA:   3'- caCU-GCGCGuu--------GCUGUAGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 71737 0.67 0.981756
Target:  5'- -aGACGCaccGCAccauCGugGUCGUGCcGCAg -3'
miRNA:   3'- caCUGCG---CGUu---GCugUAGCACGcUGU- -5'
14387 5' -53.4 NC_003521.1 + 71853 0.68 0.963275
Target:  5'- -cGAcCGCGuCGGCGACAgcagCGggaGCGACGg -3'
miRNA:   3'- caCU-GCGC-GUUGCUGUa---GCa--CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 73709 0.67 0.983679
Target:  5'- cGUGGaGCGCAGCGACc-CGggccGCGACc -3'
miRNA:   3'- -CACUgCGCGUUGCUGuaGCa---CGCUGu -5'
14387 5' -53.4 NC_003521.1 + 73832 0.68 0.962941
Target:  5'- -gGACGCGCugacggccgagggAACGACGUCaaccacaGCGACGa -3'
miRNA:   3'- caCUGCGCG-------------UUGCUGUAGca-----CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 74031 0.67 0.983679
Target:  5'- --aGCG-GCGGCGGCAUCGUcCGACc -3'
miRNA:   3'- cacUGCgCGUUGCUGUAGCAcGCUGu -5'
14387 5' -53.4 NC_003521.1 + 74118 0.67 0.981756
Target:  5'- -cGACGCcCAugGGCGcCGUGCagGACGa -3'
miRNA:   3'- caCUGCGcGUugCUGUaGCACG--CUGU- -5'
14387 5' -53.4 NC_003521.1 + 74197 0.68 0.96459
Target:  5'- -cGGCGCGCGGCccGACGcCGUcuucugccacguccuGCGACAg -3'
miRNA:   3'- caCUGCGCGUUG--CUGUaGCA---------------CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 74350 0.66 0.992185
Target:  5'- aUGGCGCuGCugcGCGGCuacggccaGUGCGGCGa -3'
miRNA:   3'- cACUGCG-CGu--UGCUGuag-----CACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 76062 0.7 0.913142
Target:  5'- -aGACGCuuGAUGACGgcgaUGUGCGGCAg -3'
miRNA:   3'- caCUGCGcgUUGCUGUa---GCACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 76150 0.67 0.979668
Target:  5'- -cGACGCGCAcACGGCgcagguacagGUCGUcGCGGg- -3'
miRNA:   3'- caCUGCGCGU-UGCUG----------UAGCA-CGCUgu -5'
14387 5' -53.4 NC_003521.1 + 76349 0.7 0.934579
Target:  5'- gGUGACGgcUGCGGCGGCGgcagCG-GCGACc -3'
miRNA:   3'- -CACUGC--GCGUUGCUGUa---GCaCGCUGu -5'
14387 5' -53.4 NC_003521.1 + 76379 0.66 0.989874
Target:  5'- cGUGACG-GCcGCGGCcgCG-GUGGCGc -3'
miRNA:   3'- -CACUGCgCGuUGCUGuaGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 77703 0.67 0.977408
Target:  5'- -aGACaGcCGUGGCGGCGUUGUugGCGACGg -3'
miRNA:   3'- caCUG-C-GCGUUGCUGUAGCA--CGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.