Results 41 - 60 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14387 | 5' | -53.4 | NC_003521.1 | + | 66376 | 0.73 | 0.810649 |
Target: 5'- -cGGCGaGCAGCGACAccagcgCGUGCGugAa -3' miRNA: 3'- caCUGCgCGUUGCUGUa-----GCACGCugU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 168364 | 0.74 | 0.756238 |
Target: 5'- -cGGCGCGUAGCGGCAgUCG-GCgGGCAg -3' miRNA: 3'- caCUGCGCGUUGCUGU-AGCaCG-CUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 39186 | 0.75 | 0.688049 |
Target: 5'- cUGACGCGCGACGACGaCGgucgGgGACc -3' miRNA: 3'- cACUGCGCGUUGCUGUaGCa---CgCUGu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 135487 | 0.77 | 0.581443 |
Target: 5'- aGUGGCGCGCAcauaaaaccgaaagcGgCGACGUCGcGCGGCGu -3' miRNA: 3'- -CACUGCGCGU---------------U-GCUGUAGCaCGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 66223 | 0.77 | 0.577445 |
Target: 5'- cGUGACGCGUAACGugAaCGUaaacGCGGCGu -3' miRNA: 3'- -CACUGCGCGUUGCugUaGCA----CGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 153116 | 0.71 | 0.894645 |
Target: 5'- --cGCGCGCGACGGCAgcagGCGGCu -3' miRNA: 3'- cacUGCGCGUUGCUGUagcaCGCUGu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 235291 | 0.71 | 0.894645 |
Target: 5'- -cGACGCGCcgccaacuggcGACGACAga-UGCGACGg -3' miRNA: 3'- caCUGCGCG-----------UUGCUGUagcACGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 101721 | 0.69 | 0.945661 |
Target: 5'- -cGAUGCGCGGCGGgggcgagaUggggaaggccggcagGUCGUGCGGCGg -3' miRNA: 3'- caCUGCGCGUUGCU--------G---------------UAGCACGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 18719 | 0.69 | 0.943906 |
Target: 5'- cUGugGCugccgcugGCGGCGGCgAUCGUgGCGGCGg -3' miRNA: 3'- cACugCG--------CGUUGCUG-UAGCA-CGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 88016 | 0.69 | 0.939358 |
Target: 5'- cUGACGUGCGugGACAg-GUGCaGCu -3' miRNA: 3'- cACUGCGCGUugCUGUagCACGcUGu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 224806 | 0.7 | 0.929568 |
Target: 5'- -gGACGCGCGugGcguaggGCGUC-UGCGGCu -3' miRNA: 3'- caCUGCGCGUugC------UGUAGcACGCUGu -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 57376 | 0.7 | 0.929568 |
Target: 5'- cGUGACGCGCcAgGGCGUCGaucucGCGcCAc -3' miRNA: 3'- -CACUGCGCGuUgCUGUAGCa----CGCuGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 141893 | 0.7 | 0.929568 |
Target: 5'- uGUGAUGCGC-ACGGC--CGUGCGcgaGCAg -3' miRNA: 3'- -CACUGCGCGuUGCUGuaGCACGC---UGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 167673 | 0.7 | 0.928538 |
Target: 5'- aGUGACGUGCucgcgguugcgguGACGACGcUCGUggaggagGCGGCGg -3' miRNA: 3'- -CACUGCGCG-------------UUGCUGU-AGCA-------CGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 225846 | 0.7 | 0.924325 |
Target: 5'- -cGGCGCGCu-CGugGUgGUGCgGGCAc -3' miRNA: 3'- caCUGCGCGuuGCugUAgCACG-CUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 192310 | 0.7 | 0.913142 |
Target: 5'- ---cCGCgGUAGCGGCGUCG-GCGGCAc -3' miRNA: 3'- cacuGCG-CGUUGCUGUAGCaCGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 88510 | 0.7 | 0.913142 |
Target: 5'- --cACGCGCAGCGACucgcagcCGUGCaGGCGc -3' miRNA: 3'- cacUGCGCGUUGCUGua-----GCACG-CUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 76062 | 0.7 | 0.913142 |
Target: 5'- -aGACGCuuGAUGACGgcgaUGUGCGGCAg -3' miRNA: 3'- caCUGCGcgUUGCUGUa---GCACGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 239238 | 0.7 | 0.912559 |
Target: 5'- uGUGGCGCugcacggccgucaGCAGCGACGgcggGUGUGGCGc -3' miRNA: 3'- -CACUGCG-------------CGUUGCUGUag--CACGCUGU- -5' |
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14387 | 5' | -53.4 | NC_003521.1 | + | 55728 | 0.7 | 0.912559 |
Target: 5'- -cGGCGCGCAGCGccucccaGCGcgCGgGCGGCAg -3' miRNA: 3'- caCUGCGCGUUGC-------UGUa-GCaCGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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